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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL0675 [new locus tag: SACOL_RS03480 ]
  • pan locus tag?: SAUPAN002488000
  • symbol: SACOL0675
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL0675 [new locus tag: SACOL_RS03480 ]
  • symbol: SACOL0675
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 701298..702191
  • length: 894
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    ATGCTTATTCCTATCCAAACATCTGTCAATTCAAGACTATCACTGTATACTAAATCGCCT
    TTCTATACTTCATTCATTTCATTTTCAGTTGGAACAATTTGTTTAATTATTTTAAATATC
    ATTATCAATCCAGAAGTATTTACTATTCACTTTTACAATAATCAATCATTTAACTACACA
    TGGGTAGTCGGTGGTTTGCTTGGGGTTAGCTTTTTAACTGGCAATTTATTGTTATTGCCA
    AAATTAGGTGCAACATTAACTGTAATTGCAACAGTTGCGGGTCAAATTATTATGGGTGTC
    ATTATTGATACATTTGGATTATTTGGCGCTACAATTCATGATTTTAATTTAATTAAAGCA
    ATTGGAGTATTGTTACTCATTGTCGGCATCGTCATAATGAATCAATTTAACAAGAATAAT
    TTATTACTAACTGATCAAAAGTATTTACTGTTTTGGCTTCTATTAGGATTTATTTTTGGT
    TTCTTTCCACCTATTCAAACGACAATTAATAGTGCTTTAGCTAGTCATACTCATTCACCA
    GCCTTTGCATCATTAGTATCATTTACAATTGGGTCAATAGCGCTATTGATTTTAACCGCT
    ATTTTTAATCGTTCTTTAAAACTAAAAACAAGTCATTTAAAATTCGGTAAATTAAAGCCT
    ATCTATTTTACTGGCGGTATACTTGGCATGGCTTTTGTAACAGCTAACATTATCTTAATG
    CCTCATATGGGTGCAGCATTAACAACACTTATTGGGATGTTTGGCCAGATTCTAATGGGC
    ATATTGATAGATCACTTTGGATTATTTGGTTCACCTAAAATAGCAATGACATCCAGAAAA
    ACTATTGGTCTATTATGTATTTTGACAGGCATTATACTTTTAAGATTATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    894

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL0675 [new locus tag: SACOL_RS03480 ]
  • symbol: SACOL0675
  • description: hypothetical protein
  • length: 297
  • theoretical pI: 10.4665
  • theoretical MW: 32407.9
  • GRAVY: 1.01582

⊟Function[edit | edit source]

  • TIGRFAM:
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 5.4)
    Cellular processes Cellular processes Sporulation and germination spore cortex biosynthesis protein YabQ (TIGR02893; HMM-score: 5.3)
  • TheSEED  :
    • Integral membrane protein
  • PFAM:
    DMT (CL0184) DMT_YdcZ; Putative inner membrane exporter, YdcZ (PF04657; HMM-score: 238.7)
    and 1 more
    EamA; EamA-like transporter family (PF00892; HMM-score: 9.9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 8
  • LocateP: Multi-transmembrane
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: -1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.011343
    • TAT(Tat/SPI): 0.00024
    • LIPO(Sec/SPII): 0.004381
  • predicted transmembrane helices (TMHMM): 9

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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