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NCBI: 02-MAR-2017

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus COL
  • locus tag: SACOL_RS03480 [old locus tag: SACOL0675 ]
  • pan locus tag?: SAUPAN002488000
  • symbol: SACOL_RS03480
  • pan gene symbol?: —
  • synonym:
  • product: membrane protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SACOL_RS03480 [old locus tag: SACOL0675 ]
  • symbol: SACOL_RS03480
  • product: membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 701298..702227
  • length: 930
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

  • Location: NC_002951 (701298..702227) NCBI
  • BioCyc: SACOL_RS03480 BioCyc
  • MicrobesOnline: see SACOL0675

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    ATGCTTCTTTTCTATATCATTGGTGTCCTAGTTGGAATGCTTATTCCTATCCAAACATCT
    GTCAATTCAAGACTATCACTGTATACTAAATCGCCTTTCTATACTTCATTCATTTCATTT
    TCAGTTGGAACAATTTGTTTAATTATTTTAAATATCATTATCAATCCAGAAGTATTTACT
    ATTCACTTTTACAATAATCAATCATTTAACTACACATGGGTAGTCGGTGGTTTGCTTGGG
    GTTAGCTTTTTAACTGGCAATTTATTGTTATTGCCAAAATTAGGTGCAACATTAACTGTA
    ATTGCAACAGTTGCGGGTCAAATTATTATGGGTGTCATTATTGATACATTTGGATTATTT
    GGCGCTACAATTCATGATTTTAATTTAATTAAAGCAATTGGAGTATTGTTACTCATTGTC
    GGCATCGTCATAATGAATCAATTTAACAAGAATAATTTATTACTAACTGATCAAAAGTAT
    TTACTGTTTTGGCTTCTATTAGGATTTATTTTTGGTTTCTTTCCACCTATTCAAACGACA
    ATTAATAGTGCTTTAGCTAGTCATACTCATTCACCAGCCTTTGCATCATTAGTATCATTT
    ACAATTGGGTCAATAGCGCTATTGATTTTAACCGCTATTTTTAATCGTTCTTTAAAACTA
    AAAACAAGTCATTTAAAATTCGGTAAATTAAAGCCTATCTATTTTACTGGCGGTATACTT
    GGCATGGCTTTTGTAACAGCTAACATTATCTTAATGCCTCATATGGGTGCAGCATTAACA
    ACACTTATTGGGATGTTTGGCCAGATTCTAATGGGCATATTGATAGATCACTTTGGATTA
    TTTGGTTCACCTAAAATAGCAATGACATCCAGAAAAACTATTGGTCTATTATGTATTTTG
    ACAGGCATTATACTTTTAAGATTATTTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    930

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SACOL_RS03480 [old locus tag: SACOL0675 ]
  • symbol: SACOL_RS03480
  • description: membrane protein
  • length: 309
  • theoretical pI: 10.3925
  • theoretical MW: 33727.6
  • GRAVY: 1.07799

⊟Function[edit | edit source]

  • TIGRFAM:
    oligosaccharyl transferase, archaeosortase A system-associated (TIGR04154; EC 2.4.1.-; HMM-score: 5.3)
  • TheSEED: see SACOL0675
  • PFAM:
    DMT (CL0184) DMT_YdcZ; Putative inner membrane exporter, YdcZ (PF04657; HMM-score: 246.7)
    and 1 more
    EamA; EamA-like transporter family (PF00892; HMM-score: 9)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 10
    • Cellwall Score: 0
    • Extracellular Score: 0
    • Internal Helices: 10
  • LocateP:
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.181826
    • TAT(Tat/SPI): 0.001486
    • LIPO(Sec/SPII): 0.031405
  • predicted transmembrane helices (TMHMM): 10

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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