Contents
⊟Summary[edit source | edit]
- pan ID?: SAUPAN002653000
- symbol?: gdpS
- description?: GGDEF domain-containing protein
- GGDEF domain-containing protein
- diguanylate cyclase
- putative GGDEF domain protein
- diguanylate cyclase domain protein
- diguanylate cyclase GGDEF domain protein
- ggdef domain protein
- Sensory transduction protein kinase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3150993..3152063
- synteny block?: BlockID0018880
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit source | edit]
04-02981:
SA2981_0724
08BA02176:
C248_0833
11819-97:
MS7_0796
6850:
RSAU_000721
71193:
ST398NM01_0822
ECT-R 2:
ECTR2_696
ED133:
SAOV_0783c
ED98:
SAAV_0708
HO 5096 0412:
SAEMRSA15_06720
JH1:
SaurJH1_0787
JH9:
SaurJH9_0770
JKD6008:
SAA6008_00761
JKD6159:
SAA6159_00701
LGA251:
SARLGA251_06790
M013:
M013TW_0733
MRSA252:
SAR0800
MSHR1132:
SAMSHR1132_06910
MSSA476:
SAS0711
Mu3:
SAHV_0743
Mu50:
SAV0746
MW2:
MW0708
RF122:
SAB0698c
ST398:
SAPIG0822
T0131:
SAT0131_00818
TCH60:
HMPREF0772_12437
TW20:
SATW20_08210
USA300_TCH1516:
USA300HOU_0773
VC40:
SAVC_03365
⊟Genome Viewer[edit source | edit]
| COL chromosome | |
| N315 chromosome | |
| NCTC8325 chromosome | |
| Newman chromosome | |
| USA300_FPR3757 chromosome |
⊟Alignments[edit source | edit]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
N315 MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
NCTC8325 MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
Newman MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
USA300_FPR3757 MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
************************************************************
COL IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
N315 IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
NCTC8325 IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
Newman IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
USA300_FPR3757 IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
************************************************************
COL QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
N315 QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
NCTC8325 QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
Newman QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
USA300_FPR3757 QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
************************************************************
COL VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
N315 VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
NCTC8325 VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
Newman VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
USA300_FPR3757 VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
************************************************************
COL SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
N315 SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
NCTC8325 SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
Newman SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
USA300_FPR3757 SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
************************************************************
COL LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
N315 LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
NCTC8325 LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
Newman LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
USA300_FPR3757 LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
********************************************************
