Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002653000
- symbol?: gdpS
- synonym:
- description?: GGDEF domain-containing protein
- GGDEF domain-containing protein
- diguanylate cyclase
- putative GGDEF domain protein
- diguanylate cyclase domain protein
- diguanylate cyclase GGDEF domain protein
- ggdef domain protein
- Sensory transduction protein kinase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3150993..3152063
- synteny block?: BlockID0018880
- occurrence?: in 100% of 34 strains
gdpS : diguanylate cyclase and modulator of Protein A, eDNA and sarS activity GdpS [1]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0724
08BA02176:
C248_0833
11819-97:
MS7_0796
6850:
RSAU_000721
71193:
ST398NM01_0822
ECT-R 2:
ECTR2_696
ED133:
SAOV_0783c
ED98:
SAAV_0708
HO 5096 0412:
SAEMRSA15_06720
JH1:
SaurJH1_0787
JH9:
SaurJH9_0770
JKD6008:
SAA6008_00761
JKD6159:
SAA6159_00701
JSNZ:
JSNZ_000717
LGA251:
SARLGA251_06790
M013:
M013TW_0733
MRSA252:
SAR0800
MSHR1132:
SAMSHR1132_06910
MSSA476:
SAS0711
Mu3:
SAHV_0743
Mu50:
SAV0746
MW2:
MW0708
RF122:
SAB0698c
ST398:
SAPIG0822
T0131:
SAT0131_00818
TCH60:
HMPREF0772_12437
TW20:
SATW20_08210
USA300_TCH1516:
USA300HOU_0773
VC40:
SAVC_03365
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
N315 MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
NCTC8325 MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
Newman MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
USA300_FPR3757 MFEAFIYNISVIVAGIYLFHRLQYSENKRMVFSKAYVTVLMTIVSLLLSVYPIPYREDYL
************************************************************
COL IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
N315 IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
NCTC8325 IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
Newman IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
USA300_FPR3757 IHLTFVPLLFLGRFTNMVYTLSATVIVAIVEIVVFNNSIMYGVTLIVIAAVTSAIGPFLK
************************************************************
COL QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
N315 QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
NCTC8325 QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
Newman QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
USA300_FPR3757 QNDVLSLLILNVVTIIILFGVALVSPIYTLSEVIILIPISLIITLASAITFVDIWHFFSL
************************************************************
COL VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
N315 VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
NCTC8325 VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
Newman VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
USA300_FPR3757 VNRYENEDKYDYLTGLGNVKEFDRHLNEISRKAEKEHQSIALLLIDIDGFKDVNDTYSHK
************************************************************
COL SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
N315 SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
NCTC8325 SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
Newman SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
USA300_FPR3757 SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIHNYSLDQSVKLAENIRSGVEKSSFH
************************************************************
COL LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
N315 LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
NCTC8325 LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
Newman LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
USA300_FPR3757 LPNKEVIKLSVSIGVGYLTDDDPKSQRKVFKDADDMVHVAKNQGRNKVMFNPIINL
********************************************************
- ↑ Fei Shang, Ting Xue, Haipeng Sun, Lei Xing, Shuo Zhang, Zhenjun Yang, Lihe Zhang, Baolin Sun
The Staphylococcus aureus GGDEF domain-containing protein, GdpS, influences protein A gene expression in a cyclic diguanylic acid-independent manner.
Infect Immun: 2009, 77(7);2849-56
[PubMed:19380471] [WorldCat.org] [DOI] (I p)A Fischer, K Kambara, H Meyer, L Stenz, E-J Bonetti, M Girard, M Lalk, P Francois, J Schrenzel
GdpS contributes to Staphylococcus aureus biofilm formation by regulation of eDNA release.
Int J Med Microbiol: 2014, 304(3-4);284-99
[PubMed:24275081] [WorldCat.org] [DOI] (I p)Chuan Chen, Xu Zhang, Fei Shang, Haipeng Sun, Baolin Sun, Ting Xue
The Staphylococcus aureus protein-coding gene gdpS modulates sarS expression via mRNA-mRNA interaction.
Infect Immun: 2015, 83(8);3302-10
[PubMed:26056387] [WorldCat.org] [DOI] (I p)