PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002715000
• symbol^?: smpB
• synonym:
• description^?: SsrA-binding protein

  descriptions from strain specific annotations:

  • SsrA-binding protein
  • SsrA-binding protein SmpB
  • putative tmRNA-binding protein
  • SsrA (tmRNA)-binding protein
  • tmRNA and SsrA-binding protein
  • tmRNA-binding protein SmpB
• strand^?: +
• coordinates^?: 3205474..3205938
• synteny block^?: BlockID0019470
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0847 (smpB)
N315:
SA0736 (smpB)
NCTC8325:
SAOUHSC_00804 (smpB)
Newman:
NWMN_0750 (smpB)
USA300_FPR3757:
SAUSA300_0765 (smpB)
04-02981:
SA2981_0759 (smpB)
08BA02176:
C248_0872 (smpB)
11819-97:
MS7_0832 (smpB)
6850:
RSAU_000759 (smpB)
71193:
ST398NM01_0860
ECT-R 2:
ECTR2_732 (smpB)
ED133:
SAOV_0823
ED98:
SAAV_0747 (smpB)
HO 5096 0412:
SAEMRSA15_07080 (smpB)
JH1:
SaurJH1_0822 (smpB)
JH9:
SaurJH9_0806 (smpB)
JKD6008:
SAA6008_00796 (smpB)
JKD6159:
SAA6159_00738 (smpB)
LGA251:
SARLGA251_07150 (smpB)
M013:
M013TW_0772
MRSA252:
SAR0837 (smpB)
MSHR1132:
SAMSHR1132_07270
MSSA476:
SAS0747 (smpB)
Mu3:
SAHV_0778 (smpB)
Mu50:
SAV0782 (smpB)
MW2:
MW0743 (smpB)
RF122:
SAB0737 (smpB)
ST398:
SAPIG0860 (smpB)
T0131:
SAT0131_00854
TCH60:
HMPREF0772_12397 (smpB)
TW20:
SATW20_08560 (smpB)
USA300_TCH1516:
USA300HOU_0811 (smpB)
VC40:
SAVC_03550 (smpB)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAKKKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGEMY
  N315            MAKKKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGEMY
  NCTC8325        MAKKKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGEMY
  Newman          MAKKKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGEMY
  USA300_FPR3757  MAKKKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGEMY
                  ************************************************************
  
  COL             LNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLKHGHCKV
  N315            LNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIFKLGEQTREIGYSIVPLKLYLKHGHCKV
  NCTC8325        LNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLKHGHCKV
  Newman          LNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLKHGHCKV
  USA300_FPR3757  LNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLKHGHCKV
                  ********************************:***:***********************
  
  COL             LLGVARGKKKYDKRQALKEKAVKRDVARDMKARY
  N315            LLGVARGKKKYDKRQALKEKAVKRDVARDMKARY
  NCTC8325        LLGVARGKKKYDKRQALKEKAVKRDVARDMKARY
  Newman          LLGVARGKKKYDKRQALKEKAVKRDVARDMKARY
  USA300_FPR3757  LLGVARGKKKYDKRQALKEKAVKRDVARDMKARY
                  **********************************