PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002772000
• symbol^?: —
• synonym:
• description^?: DUF5067 domain-containing protein

  descriptions from strain specific annotations:

  • DUF5067 domain-containing protein
  • lipoprotein, putative
  • putative lipoprotein (pseudogene)
• strand^?: -
• coordinates^?: 3243944..3244660
• synteny block^?: BlockID0019750
• occurrence^?: in 76% of 33 strains

⊟Orthologs

COL:
SACOL0851
N315:
SA0739
NCTC8325:
SAOUHSC_00808
Newman:
NWMN_0753
USA300_FPR3757:
SAUSA300_0769
04-02981:
SA2981_0763
08BA02176:
—
11819-97:
MS7_0835
6850:
RSAU_000762
71193:
—
ECT-R 2:
ECTR2_735
ED133:
SAOV_0824c
ED98:
SAAV_0753
HO 5096 0412:
—
JH1:
SaurJH1_0825
JH9:
SaurJH9_0809
JKD6008:
SAA6008_00799
JKD6159:
SAA6159_00740
LGA251:
SARLGA251_07160
M013:
M013TW_0774
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS0749
Mu3:
SAHV_0804
Mu50:
SAV0808
MW2:
MW0761
RF122:
SAB0741c
ST398:
—
T0131:
—
TCH60:
—
TW20:
SATW20_08590
USA300_TCH1516:
USA300HOU_0815
VC40:
SAVC_03565

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
  N315            MKKVMGILLASTLILGACGHHQDSAKKESASHKKKENDNEELNEELKEFKSKKNMDIKIK
  NCTC8325        MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
  Newman          MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
  USA300_FPR3757  MKKVMGILLASTLILGACGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIK
                  *****************************:******************************
  
  COL             GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
  N315            GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
  NCTC8325        GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
  Newman          GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
  USA300_FPR3757  GDTIVSDKFEAKIKEPFIINEKDEKKKYIAFKMEITAKKDDKDLNPSSISHDYINITQDD
                  ************************************************************
  
  COL             KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
  N315            KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
  NCTC8325        KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
  Newman          KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
  USA300_FPR3757  KNTVNKLRDGYLLSDKKYKDWTEHNQDQIKKGKTAQAMFIYELRGDGNINLNVHKYSEDK
                  ************************************************************
  
  COL             TVDSKSFKFSKLKTEDFSHRAETREEAEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
  N315            TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSSLD
  NCTC8325        TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
  Newman          TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
  USA300_FPR3757  TVDSKSFKFSKLKTEDFSHRAETREEVEKKEKEFEEEYKKEQEREKEKEKQKDDDHSGLD
                  **************************.******************************.**
  
  COL             EV
  N315            EV
  NCTC8325        EV
  Newman          EV
  USA300_FPR3757  EV
                  **