PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary[edit | edit source]

pan ID^?: SAUPAN002843000
symbol^?: seq
description^?: staphylococcal enterotoxin Q
- staphylococcal enterotoxin Q
- enterotoxin
- enterotoxin type I
- enterotoxin Q
- staphylococcal enterotoxin type I
- Superantigen enterotoxin SEL
strand^?: -
coordinates^?: 3295295..3296023
synteny block^?: BlockID0020270
occurrence^?: in 21% of 33 strains

⊟Orthologs[edit | edit source]

COL:

SACOL0887 (sei)

N315:

—

NCTC8325:

—

Newman:

—

USA300_FPR3757:

SAUSA300_0801 (seq)

04-02981:

—

08BA02176:

—

11819-97:

—

6850:

—

71193:

—

ECT-R 2:

—

ED133:

—

ED98:

—

HO 5096 0412:

—

JH1:

—

JH9:

—

JKD6008:

SAA6008_00840 (sem)

JKD6159:

—

LGA251:

—

M013:

M013TW_0808

MRSA252:

—

MSHR1132:

—

MSSA476:

—

Mu3:

—

Mu50:

—

MW2:

—

RF122:

—

ST398:

—

T0131:

SAT0131_00917

TCH60:

—

TW20:

SATW20_08910 (entQ)

USA300_TCH1516:

USA300HOU_0852

VC40:

—

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLE
USA300_FPR3757  MNKIFRVLTVSLFFFTFLIKNNLAYADVGVINLRNFYTNYQPETLQGVSSGNFSTSHQLE
                ******:******************************:**:**.****************

COL             YIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIP
USA300_FPR3757  YIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIP
                ************************************************************

COL             INLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSK
USA300_FPR3757  INLWVNGKQNTISTDEVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSK
                ***************:********************************************

COL             FNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYDDNKTIDTENFHLDVEISYEK
USA300_FPR3757  FNSGFNKGKITFHLNNETSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEK
                *****************.*********************:******:*************

COL             TE
USA300_FPR3757  TE
                **

Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

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COL
USA300_FPR3757