PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN002843000
• symbol^?: seq
• synonym:
• description^?: staphylococcal enterotoxin Q

  descriptions from strain specific annotations:

  • staphylococcal enterotoxin Q
  • enterotoxin
  • enterotoxin Q
  • enterotoxin type I
  • staphylococcal enterotoxin type I
  • Superantigen enterotoxin SEL
• strand^?: -
• coordinates^?: 3295295..3296023
• synteny block^?: BlockID0020270
• occurrence^?: in 21% of 33 strains

⊟Orthologs

COL:
SACOL0887 (sei)
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_0801 (seq)
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_00840 (sem)
JKD6159:
—
LGA251:
—
M013:
M013TW_0808
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_00917
TCH60:
—
TW20:
SATW20_08910 (entQ)
USA300_TCH1516:
USA300HOU_0852
VC40:
—

⊟Genome Viewer

COL
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLE
  USA300_FPR3757  MNKIFRVLTVSLFFFTFLIKNNLAYADVGVINLRNFYTNYQPETLQGVSSGNFSTSHQLE
                  ******:******************************:**:**.****************
  
  COL             YIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIP
  USA300_FPR3757  YIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIP
                  ************************************************************
  
  COL             INLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSK
  USA300_FPR3757  INLWVNGKQNTISTDEVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSK
                  ***************:********************************************
  
  COL             FNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYDDNKTIDTENFHLDVEISYEK
  USA300_FPR3757  FNSGFNKGKITFHLNNETSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEK
                  *****************.*********************:******:*************
  
  COL             TE
  USA300_FPR3757  TE
                  **