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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
⊟Summary[edit | edit source]
- pan ID?: SAUPAN002872000
- symbol?: —
- synonym:
- description?: CAAX amino protease
- strand?: +
- coordinates?: 3317849..3326653
- synteny block?: BlockID0020430
- occurrence?: in 6% of 34 strains
abiD : abortive infection system protein AbiD [1]
found on satellite pathogenicity island SaPI5
• abiD results in a > 4-log reduction in efficiency-of-plating of Siphovirus Sebago
• abiD results in approximately a 1 - 2 log reduction in efficiency-of-plating of Siphovirus Φ12
• abiD has no effect on Siphovirus Φ11, Φ29, Φ52a, Φ55, Φ80α, Φ85, Φ6480, Φ7093, Φ7094, Φ7903, Φ8490, ΦNM1, ΦNM2, ΦNM4, kayvirus Sb1, ISP, 812, K, Maine, silviavirus Romulus or Remus
⊟Orthologs[edit | edit source]
COL:
—
N315:
—
NCTC8325:
—
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
—
TCH60:
—
TW20:
—
USA300_TCH1516:
USA300HOU_0866
VC40:
—
⊟Genome Viewer[edit | edit source]
⊟Alignments[edit | edit source]
- alignment of orthologues:
- ↑ J Anba, E Bidnenko, A Hillier, D Ehrlich, M C Chopin
Characterization of the lactococcal abiD1 gene coding for phage abortive infection.
J Bacteriol: 1995, 177(13);3818-23
[PubMed:7601848] [WorldCat.org] [DOI] (P p)Marie-Christine Chopin, Alain Chopin, Elena Bidnenko
Phage abortive infection in lactococci: variations on a theme.
Curr Opin Microbiol: 2005, 8(4);473-9
[PubMed:15979388] [WorldCat.org] [DOI] (P p)Nitzan Aframian, Avigdor Eldar
Abortive infection antiphage defense systems: separating mechanism and phenotype.
Trends Microbiol: 2023, 31(10);1003-1012
[PubMed:37268559] [WorldCat.org] [DOI] (I p)Sarah M Voss, Katharine C King, Devin J Hunt, Adam A Wilson, Bruria Samuel, Orazio R Bagno, Peter F W Sparklin, Bridget Cassata, Joshua W Modell
Engineered phages evade the complete defense repertoire of highly phage-resistant MRSA clinical isolates.
bioRxiv: 2026;
[PubMed:41929026] [WorldCat.org] [DOI] (I e)