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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003114000
- symbol?: —
- synonym:
- description?: LysR family transcriptional regulator
- LysR family transcriptional regulator
- LysR family regulatory protein
- transcriptional regulator, LysR family
- bacterial regulatory helix-turn-helix , lysR family protein
- Citrate synthase I repressor
- regulatory helix-turn-helix protein, lysR family protein
- regulatory protein LysR family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3500929..3501801
- synteny block?: BlockID0022070
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_0931 (lysR)
08BA02176:
C248_1002
11819-97:
MS7_0931
6850:
RSAU_000852
71193:
ST398NM01_0975
ECT-R 2:
ECTR2_831
ED133:
SAOV_0922c
ED98:
SAAV_0936
HO 5096 0412:
SAEMRSA15_08050
JH1:
SaurJH1_0994
JH9:
SaurJH9_0975
JKD6008:
SAA6008_00928
JKD6159:
SAA6159_00835
LGA251:
SARLGA251_08930
M013:
M013TW_0894
MRSA252:
SAR0939
MSHR1132:
SAMSHR1132_08270
MSSA476:
SAS0846
Mu3:
SAHV_0971
Mu50:
SAV0976
MW2:
MW0858
RF122:
SAB0844c
ST398:
SAPIG0975
T0131:
SAT0131_01009
TCH60:
HMPREF0772_12270
TW20:
SATW20_09750
USA300_TCH1516:
USA300HOU_0934
VC40:
SAVC_04050
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
N315 MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
NCTC8325 MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
Newman MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
USA300_FPR3757 MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
************************************************************
COL GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
N315 GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
NCTC8325 GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
Newman GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
USA300_FPR3757 GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
************************************************************
COL DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
N315 DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
NCTC8325 DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
Newman DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
USA300_FPR3757 DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
************************************************************
COL SLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
N315 SLFEKYKIISDNHPEYWSSLKNNILNIYGKAQFLSINDVHTSIKLIEMNQGISFLPIYIT
NCTC8325 SLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
Newman SLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
USA300_FPR3757 SLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
**************************** ***************************:***
COL TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
N315 TDSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
NCTC8325 TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
Newman TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
USA300_FPR3757 TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
*:***********************************************