PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003136000
• symbol^?: opp3F
• synonym:
• description^?: oligopeptide ABC transporter ATP-binding protein

  descriptions from strain specific annotations:

  • oligopeptide ABC transporter ATP-binding protein
  • peptide ABC transporter ATP-binding protein
  • ABC transporter ATP-binding protein
  • oligopeptide transport system ATP-binding protein OppF, putative
  • Oligopeptide transport ATP-binding protein oppF
  • putative oligopeptide transport ATP-bindingprotein
  • ABC transporter family protein
  • ABC transporter-like protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, ABC protein, Opp3F
  • oligopeptide ABC transporter, ATP-binding protein
  • oligopeptide transport ATP-binding protein
  • Oligopeptide transport system ATP-binding protein
  • oligopeptide transport system ATP-binding protein OppF homologue
  • oligopeptide transport system ATP-binding protein OppF-like protein
  • pseudogene
• strand^?: +
• coordinates^?: 3519634..3520575
• synteny block^?: BlockID0022280
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL0994 (oppF)
N315:
SA0848 (oppF)
NCTC8325:
SAOUHSC_00926
Newman:
NWMN_0859 (oppF)
USA300_FPR3757:
SAUSA300_0890 (oppF)
04-02981:
SA2981_0944 (oppF)
08BA02176:
C248_1012 (oppF)
11819-97:
MS7_0944
6850:
RSAU_000863 (oppF1)
71193:
ST398NM01_0985
ECT-R 2:
ECTR2_844 (oppF)
ED133:
SAOV_0935
ED98:
SAAV_0950 (oppF)
HO 5096 0412:
SAEMRSA15_08180 (oppF)
JH1:
SaurJH1_1007
JH9:
SaurJH9_0988
JKD6008:
SAA6008_00942 (oppF)
JKD6159:
SAA6159_00846 (opp3F)
LGA251:
SARLGA251_09050 (oppF)
M013:
M013TW_0911
MRSA252:
SAR0952 (oppF)
MSHR1132:
SAMSHR1132_08370
MSSA476:
SAS0859
Mu3:
SAHV_0984 (oppF)
Mu50:
SAV0989 (oppF)
MW2:
MW0871 (oppF)
RF122:
SAB0855 (oppF)
ST398:
SAPIG0985
T0131:
SAT0131_01022 (glyA)
TCH60:
HMPREF0772_12256 (oppF3)
TW20:
SATW20_09870 (oppF)
USA300_TCH1516:
USA300HOU_0947 (oppF1)
VC40:
SAVC_04115

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLVGESGCGKSTTGKSIIK
  N315            MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLVGESGCGKSTTGKSIIK
  NCTC8325        MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLVGESGCGKSTTGKSIIK
  Newman          MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLVGESGCGKSTTGKSIIK
  USA300_FPR3757  MKNDEVLLSIKNLKQYFNAGKKNEVRAIENISFDIYKGETLGLVGESGCGKSTTGKSIIK
                  ************************************************************
  
  COL             LNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIH
  N315            LNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIH
  NCTC8325        LNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIH
  Newman          LNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIH
  USA300_FPR3757  LNDITSGEILYEGIDIQKIRKRKDLLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIH
                  ************************************************************
  
  COL             HLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARVLAVEPEFIIADEP
  N315            HLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADEP
  NCTC8325        HLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADEP
  Newman          HLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARVLAVEPEFIIADEP
  USA300_FPR3757  HLATDKRDRKKRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADEP
                  **********************************************.*************
  
  COL             ISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVKYISDRIAVMHFGKIVEIGPAEE
  N315            ISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVKYISDRIAVMHFGKIVEIGPAEE
  NCTC8325        ISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVKYISDRIAVMHFGKIVEIGPAEE
  Newman          ISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVKYISDRIAVMHFGKIVEIGPAEE
  USA300_FPR3757  ISALDVSIQAQVVNLLLKLQRERGITFLFIAHDLSMVKYISDRIAVMHFGKIVEIGPAEE
                  ************************************************************
  
  COL             IYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDDEANNHLRQLHEIRPNHFVFSTEEE
  N315            IYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDDEANNHLRQLHEIRPNHFVFSTEEE
  NCTC8325        IYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDDEANNHLRQLHEIRPNHFVFSTEEE
  Newman          IYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDDEANNHLRQLHEIRPNHFVFSTEEE
  USA300_FPR3757  IYQNPLHDYTKSLLSAIPQPDPESERSRKRFSYIDDEANNHLRQLHEIRPNHFVFSTEEE
                  ************************************************************
  
  COL             AAQLRENKLVTQN
  N315            AAQLRENKLVTQN
  NCTC8325        AAQLRENKLVTQN
  Newman          AAQLRENKLVTQN
  USA300_FPR3757  AAQLRENKLVTQN
                  *************