From AureoWiki
Jump to navigation Jump to search

Summary[edit | edit source]

  • pan ID?: SAUPAN003223000
  • symbol?:
  • synonym:
  • description?: membrane protein

      descriptions from strain specific annotations:

    • membrane protein
    • bacteriocin-associated integral membrane family protein
    • bacteriocin-associated integral membrane protein
    • bacteriocin-associated integral membrane (putative immunity) protein
    • membrane spanning protein
    • pseudogene
  • strand?: +
  • coordinates?: 3605489..3607453
  • synteny block?: BlockID0023090
  • occurrence?: in 97% of 33 strains

lcnB: lactococcin 972-like bacteriocin immunity integral membrane protein [1]

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    SA2981_0986
    08BA02176:
    C248_1056
    11819-97:
    MS7_0988
    6850:
    RSAU_000923
    71193:
    ST398NM01_1029
    ECT-R 2:
    ECTR2_887
    ED133:
    SAOV_0977
    ED98:
    SAAV_0995
    HO 5096 0412:
    SAEMRSA15_08620
    JH1:
    SaurJH1_1113
    JH9:
    SaurJH9_1091
    JKD6008:
    SAA6008_00985
    JKD6159:
    SAA6159_00887
    LGA251:
    SARLGA251_09460
    M013:
    M013TW_0961
    MRSA252:
    SAR1002
    MSHR1132:
    SAMSHR1132_08790
    MSSA476:
    SAS0965
    Mu3:
    SAHV_1026
    Mu50:
    SAV1033
    MW2:
    MW0914
    RF122:
    SAB0896
    ST398:
    SAPIG1029
    T0131:
    SAT0131_01065
    TCH60:
    HMPREF0772_12204
    TW20:
    SATW20_10280
    USA300_TCH1516:
    VC40:
    SAVC_04320

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
    N315            MKWFKLILDVTTFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRINQF
    NCTC8325        MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
    Newman          MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
    USA300_FPR3757  MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
                    *********** *********************************************:**

    COL             AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
    N315            AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKATTITPFNAKYNIHYLSDDELLKKDIKGS
    NCTC8325        AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
    Newman          AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
    USA300_FPR3757  AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
                    ********************************:******************:********

    COL             YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
    N315            YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIEVPLSALLIVYFIYYI
    NCTC8325        YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
    Newman          YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
    USA300_FPR3757  YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
                    ******************************************** ****:**********

    COL             FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
    N315            FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIISQILLTTSVLWILNYTGNLD
    NCTC8325        FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
    Newman          FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
    USA300_FPR3757  FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
                    ****************************************:*******************

    COL             LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
    N315            LFILRLVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
    NCTC8325        LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
    Newman          LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
    USA300_FPR3757  LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
                    *****:******************************************************

    COL             IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
    N315            IASVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMLRSEQLVKAS
    NCTC8325        IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
    Newman          IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
    USA300_FPR3757  IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
                    **.***********************************************:*********

    COL             EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
    N315            EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
    NCTC8325        EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
    Newman          EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
    USA300_FPR3757  EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
                    ************************************************************

    COL             PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
    N315            PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDYRIFSFDARDSRHLSFIEA
    NCTC8325        PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
    Newman          PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
    USA300_FPR3757  PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
                    ***************************************** ******************

    COL             PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
    N315            PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIENYHLDGEISGITNYKDSVMEMY
    NCTC8325        PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
    Newman          PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
    USA300_FPR3757  PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
                    **************************************:*********************

    COL             HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
    N315            HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
    NCTC8325        HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
    Newman          HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
    USA300_FPR3757  HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
                    ************************************************************

    COL             NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
    N315            NNIVVVFIGILTNVILHSQYIMMIFATILVVQILLQICSLYYHGRRFNEVIKEF
    NCTC8325        NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
    Newman          NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
    USA300_FPR3757  NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
                    *****:************:****:******************************

  1. Seven Nazipi, Sofie G Vangkilde-Pedersen, Mette Marie Busck, Dorthe Kirstine Lund, Ian P G Marshall, Trine Bilde, Marie Braad Lund, Andreas Schramm
    An antimicrobial Staphylococcus sciuri with broad temperature and salt spectrum isolated from the surface of the African social spider, Stegodyphus dumicola.
    Antonie Van Leeuwenhoek: 2021, 114(3);325-335
    [PubMed:33543432] [WorldCat.org] [DOI] (I p)
    M J van Belkum, R W Worobo, M E Stiles
    Double-glycine-type leader peptides direct secretion of bacteriocins by ABC transporters: colicin V secretion in Lactococcus lactis.
    Mol Microbiol: 1997, 23(6);1293-301
    [PubMed:9106219] [WorldCat.org] [DOI] (P p)