⊟Summary[edit | edit source]

pan ID^?: SAUPAN003223000
symbol^?: —
synonym:
description^?: membrane protein
- membrane protein
- bacteriocin-associated integral membrane family protein
- bacteriocin-associated integral membrane protein
- bacteriocin-associated integral membrane (putative immunity) protein
- membrane spanning protein
- pseudogene
strand^?: +
coordinates^?: 3605489..3607453
synteny block^?: BlockID0023090
occurrence^?: in 97% of 33 strains

lcnB: lactococcin 972-like bacteriocin immunity integral membrane protein ^[1]

⊟Orthologs[edit | edit source]

COL:

N315:

NCTC8325:

Newman:

USA300_FPR3757:

04-02981:

SA2981_0986

08BA02176:

C248_1056

11819-97:

MS7_0988

6850:

RSAU_000923

71193:

ST398NM01_1029

ECT-R 2:

ECTR2_887

ED133:

SAOV_0977

ED98:

SAAV_0995

HO 5096 0412:

SAEMRSA15_08620

JH1:

SaurJH1_1113

JH9:

SaurJH9_1091

JKD6008:

SAA6008_00985

JKD6159:

SAA6159_00887

LGA251:

SARLGA251_09460

M013:

M013TW_0961

MRSA252:

SAR1002

MSHR1132:

SAMSHR1132_08790

MSSA476:

SAS0965

Mu3:

SAHV_1026

Mu50:

SAV1033

MW2:

MW0914

RF122:

SAB0896

ST398:

SAPIG1029

T0131:

SAT0131_01065

TCH60:

HMPREF0772_12204

TW20:

SATW20_10280

USA300_TCH1516:

—

VC40:

SAVC_04320

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

alignment of orthologues:
CLUSTAL format alignment by MAFFT L-INS-i (v7.307)

COL             MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
N315            MKWFKLILDVTTFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRINQF
NCTC8325        MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
Newman          MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
USA300_FPR3757  MKWFKLILDVTIFILIAILLFVYTYKENEEILPDTKYPIAVTDWNKKYSKNEIYKRIDQF
                *********** *********************************************:**

COL             AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
N315            AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKATTITPFNAKYNIHYLSDDELLKKDIKGS
NCTC8325        AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
Newman          AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
USA300_FPR3757  AKNENVAIYKSTSNYTNKNVDKDIYVFNKSKAATITPFNAKYNIHYLSDDEVLKKDIKGS
                ********************************:******************:********

COL             YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
N315            YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIEVPLSALLIVYFIYYI
NCTC8325        YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
Newman          YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
USA300_FPR3757  YFVKDKNFDVSKFINFLKEYGVTAESYKIDHMMIAVGVIKQMNIVVPLSSLLIVYFIYYI
                ******************************************** ****:**********

COL             FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
N315            FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIISQILLTTSVLWILNYTGNLD
NCTC8325        FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
Newman          FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
USA300_FPR3757  FEKNINFKAYAIKYLNGFTLRKIIFENFSKKCTYWVTLIITQILLTTSVLWILNYTGNLD
                ****************************************:*******************

COL             LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
N315            LFILRLVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
NCTC8325        LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
Newman          LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
USA300_FPR3757  LFILRIVLLSCLFILTISVINLWTFLMLLNLNIANMIKGKQHFKTIRFINTVCKSILLVL
                *****:******************************************************

COL             IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
N315            IASVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMLRSEQLVKAS
NCTC8325        IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
Newman          IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
USA300_FPR3757  IANVMIENTSVIKDLNKIKETEKYWNVLDDYYTIEFAPYHETKQSLIDNMVRSEQLVKAS
                **.***********************************************:*********

COL             EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
N315            EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
NCTC8325        EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
Newman          EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
USA300_FPR3757  EAENNAILFKPKGDSVDNDNFSPDEGNVILVNNQFWSIYYKQFQPDIPIKNQKNNVEVII
                ************************************************************

COL             PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
N315            PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDYRIFSFDARDSRHLSFIEA
NCTC8325        PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
Newman          PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
USA300_FPR3757  PQKFHAMRNEINQAYHSWFEFVQNKNNKENKLSIQFINKNDCRIFSFDARDSRHLSFIEA
                ***************************************** ******************

COL             PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
N315            PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIENYHLDGEISGITNYKDSVMEMY
NCTC8325        PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
Newman          PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
USA300_FPR3757  PIIVNVQASDLSNDFYYAMISQGGYLFKNYDALVKNIEKYHLDGEISGITNYKDSVMEMY
                **************************************:*********************

COL             HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
N315            HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
NCTC8325        HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
Newman          HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
USA300_FPR3757  HENNLKLTVLNFSQIIIAIILIIIILFDVKYYFEQHRKLLVIKKLYGYSTLRANYQYLLI
                ************************************************************

COL             NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
N315            NNIVVVFIGILTNVILHSQYIMMIFATILVVQILLQICSLYYHGRRFNEVIKEF
NCTC8325        NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
Newman          NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
USA300_FPR3757  NNIVVIFIGILTNVILHSHYIMMLFATILVVQILLQICSLYYHGRRFNEVIKEF
                *****:************:****:******************************

↑ Seven Nazipi, Sofie G Vangkilde-Pedersen, Mette Marie Busck, Dorthe Kirstine Lund, Ian P G Marshall, Trine Bilde, Marie Braad Lund, Andreas Schramm
An antimicrobial Staphylococcus sciuri with broad temperature and salt spectrum isolated from the surface of the African social spider, Stegodyphus dumicola.
Antonie Van Leeuwenhoek: 2021, 114(3);325-335
[PubMed:33543432] [WorldCat.org] [DOI] (I p)M J van Belkum, R W Worobo, M E Stiles
Double-glycine-type leader peptides direct secretion of bacteriocins by ABC transporters: colicin V secretion in Lactococcus lactis.
Mol Microbiol: 1997, 23(6);1293-301
[PubMed:9106219] [WorldCat.org] [DOI] (P p)

[1] Seven Nazipi, Sofie G Vangkilde-Pedersen, Mette Marie Busck, Dorthe Kirstine Lund, Ian P G Marshall, Trine Bilde, Marie Braad Lund, Andreas Schramm
An antimicrobial Staphylococcus sciuri with broad temperature and salt spectrum isolated from the surface of the African social spider, Stegodyphus dumicola.
Antonie Van Leeuwenhoek: 2021, 114(3);325-335
[PubMed:33543432] [WorldCat.org] [DOI] (I p)M J van Belkum, R W Worobo, M E Stiles
Double-glycine-type leader peptides direct secretion of bacteriocins by ABC transporters: colicin V secretion in Lactococcus lactis.
Mol Microbiol: 1997, 23(6);1293-301
[PubMed:9106219] [WorldCat.org] [DOI] (P p)

[1]

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Contents

⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

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⊟Summary[edit | edit source]

⊟Orthologs[edit | edit source]

⊟Genome Viewer[edit | edit source]

⊟Alignments[edit | edit source]