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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003325000
- symbol?: potC
- synonym:
- description?: spermidine/putrescine ABC transporter permease
- spermidine/putrescine ABC transporter permease
- ABC transporter permease
- spermidine/putrescine ABC transporter, permease protein, putative
- spermidine/putrescine ABC transporter permease protein
- Spermidine Putrescine ABC transporter permease component potC
- binding--dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane component family protein
- binding-protein-dependent transport system inner membrane protein
- binding-protein-dependent transport systems inner membrane component
- PotC
- putative ABC transport system permease
- spermidine/putrescine ABC superfamily ATP binding cassette transporter, permease protein
- spermidine/putrescine ABC transporter
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3692388..3693206
- synteny block?: BlockID0024090
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1058 (potC)
08BA02176:
C248_1128
11819-97:
MS7_1058
6850:
RSAU_000986 (potC)
71193:
ST398NM01_1098
ECT-R 2:
ECTR2_956
ED133:
SAOV_1045
ED98:
SAAV_1066
HO 5096 0412:
SAEMRSA15_09310
JH1:
SaurJH1_1183
JH9:
SaurJH9_1161
JKD6008:
SAA6008_01056 (potC)
JKD6159:
SAA6159_00957 (potC)
LGA251:
SARLGA251_10140
M013:
M013TW_1033
MRSA252:
SAR1075
MSHR1132:
SAMSHR1132_09480
MSSA476:
SAS1036
Mu3:
SAHV_1093 (potC)
Mu50:
SAV1101 (potC)
MW2:
MW0984 (potC)
RF122:
SAB0967
ST398:
SAPIG1098
T0131:
SAT0131_01139
TCH60:
HMPREF0772_12131 (potC)
TW20:
SATW20_10960
USA300_TCH1516:
—
VC40:
SAVC_04665
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFN
N315 MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFN
NCTC8325 MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFN
Newman MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFN
USA300_FPR3757 MKWYGKLYIGILLAILYIPIFFLMFYSFNSAGNMIHFEHFTLEHYQSLFQNDHLMSVIFN
************************************************************
COL TIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTT
N315 TIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTT
NCTC8325 TIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTT
Newman TIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTT
USA300_FPR3757 TIAVALLAASISTVIGTFGAIAIYYLRNKKFKVTLLTLNNVLMVSSDVVIGASFLIMFTT
************************************************************
COL IGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNII
N315 IGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNII
NCTC8325 IGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNII
Newman IGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNII
USA300_FPR3757 IGHFTGLGLGFWTVLISHIAFCIPIVVIIVLPQLYEMNNNMLNAARDLGATEPQLLSNII
************************************************************
COL IPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLL
N315 IPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLL
NCTC8325 IPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLL
Newman IPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLL
USA300_FPR3757 IPNILPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTLL
************************************************************
COL FAVIVLGILGYYLIQYVINKKKLIKRGVK
N315 FAVIVLGILGYYLIQYVINKKKLIKRGVK
NCTC8325 FAVIVLGILGYYLIQYVINKKKLIKRGVK
Newman FAVIVLGILGYYLIQYVINKKKLIKRGVK
USA300_FPR3757 FAVIVLGILGYYLIQYVINKKKLIKRGVK
*****************************