PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003326000
• symbol^?: potD
• synonym:
• description^?: spermidine/putrescine ABC transporter substrate-binding protein

  descriptions from strain specific annotations:

  • spermidine/putrescine ABC transporter substrate-binding protein
  • spermidine/putrescine ABC transporter, substrate-binding lipoprotein, putative
  • spermidine/putrescine ABC transporter binding protein
  • spermidine/putrescine ABC transporter spermidine/putrescine-binding protein
  • ABC transporter, periplasmic spermidine putrescine-binding protein potD
  • ABC transporter extracellular binding protein
  • bacterial extracellular solute-binding family protein
  • extracellular solute-binding family protein
  • extracellular solute-binding protein
  • spermidine/putrescine ABC superfamily ATP binding cassette transporter, binding protein
  • Spermidine/putrescine ABC transporter, binding protein
  • spermidine/putrescine ABC transporter, spermidine
  • spermidine/putrescine ABC transporter ATP-binding protein
  • spermidine/putrescine-binding periplasmic protein precursor
  • Spermidine/putrescine-binding protein
  • spermidine/putrescine-binding protein -like protein
  • spermidine/putrescine-binding protein precursor-like protein
• strand^?: +
• coordinates^?: 3693206..3694279
• synteny block^?: BlockID0024100
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1111
N315:
SA0953 (potD)
NCTC8325:
SAOUHSC_01049
Newman:
NWMN_0968
USA300_FPR3757:
SAUSA300_1002 (potD)
04-02981:
SA2981_1059 (potD)
08BA02176:
C248_1129
11819-97:
MS7_1059
6850:
RSAU_000987 (potD)
71193:
ST398NM01_1099
ECT-R 2:
ECTR2_957
ED133:
SAOV_1046
ED98:
SAAV_1067
HO 5096 0412:
SAEMRSA15_09320
JH1:
SaurJH1_1184
JH9:
SaurJH9_1162
JKD6008:
SAA6008_01057 (potD)
JKD6159:
SAA6159_00958 (potD)
LGA251:
SARLGA251_10150
M013:
M013TW_1034
MRSA252:
SAR1076
MSHR1132:
SAMSHR1132_09490
MSSA476:
SAS1037
Mu3:
SAHV_1094 (potD)
Mu50:
SAV1102 (potD)
MW2:
MW0985 (potD)
RF122:
SAB0968
ST398:
SAPIG1099
T0131:
SAT0131_01140
TCH60:
HMPREF0772_12130 (potD)
TW20:
SATW20_10970
USA300_TCH1516:
USA300HOU_1043 (potD)
VC40:
SAVC_04670

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
  N315            MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
  NCTC8325        MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
  Newman          MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
  USA300_FPR3757  MKRFLQLIIGALVVGMLCLTLSHWFKSKEQVHTNQKIYVYNWGEYIDPELIKKFEKETGI
                  ************************************************************
  
  COL             QVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
  N315            QVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
  NCTC8325        QVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
  Newman          QVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
  USA300_FPR3757  QVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKRDHLLLPIDHNKVPNIKNLDSD
                  ************************************************************
  
  COL             YMNMSFDRGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
  N315            YMNMSFDKGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
  NCTC8325        YMNMSFDRGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
  Newman          YMNMSFDRGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
  USA300_FPR3757  YMNMSFDRGNKYSLPYFFGTVGILYNKEKYPNESFDSWKSLYNPKFKNQILLVDGAREII
                  *******:****************************************************
  
  COL             GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
  N315            GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
  NCTC8325        GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
  Newman          GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
  USA300_FPR3757  GMSLNKLGYNLNDRNSHHLKEAERDLTKLAPQVRGVVGDEITMMLQQNEGNIAVVWSGVA
                  ************************************************************
  
  COL             APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
  N315            APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
  NCTC8325        APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
  Newman          APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
  USA300_FPR3757  APLVQEGDKYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAKNNKQNTEFVGY
                  ************************************************************
  
  COL             ATPNKAARQLLPKEIKDDHRFYPTKKEQERLEVYKDLGPEVLSEYNENFLNFKMSLK
  N315            ATPNKAARQLLPKEIKDDHRFYPTKKEQERLEVYKDLGPEVLSEYNENFLNFKMSLK
  NCTC8325        ATPNKAARQLLPKEIKDDHRFYPTKKEQERLEVYKDLGPEVLSEYNENFLNFKMSLK
  Newman          ATPNKAARQLLPKEIKDDHRFYPTKKEQERLEVYKDLGPEVLSEYNENFLNFKMSLK
  USA300_FPR3757  ATPNKAARQLLPKEIKDDHRFYPTKKEQERLEVYKDLGPEVLSEYNENFLNFKMSLK
                  *********************************************************