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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003351000
- symbol?: rsmD
- description?: methyltransferase
- methyltransferase
- S-adenosylmethionine-dependent methyltransferase, putative
- 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
- Ribosomal RNA small subunit methyltransferase D
- site-specific DNA-methyltransferase (adenine-specific)
- methyltransferase small domain-containing protein
- putative methylase
- RNA methyltransferase, RsmD family
- RsmD family RNA methyltransferase
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3717696..3718247
- synteny block?: BlockID0024350
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1080
08BA02176:
C248_1150
11819-97:
MS7_1080
6850:
RSAU_001008
71193:
ST398NM01_1120
ECT-R 2:
ECTR2_978
ED133:
SAOV_1065
ED98:
SAAV_1090
HO 5096 0412:
SAEMRSA15_09530
JH1:
SaurJH1_1205
JH9:
SaurJH9_1183
JKD6008:
SAA6008_01078
JKD6159:
SAA6159_00978
LGA251:
SARLGA251_10360
M013:
M013TW_1055
MRSA252:
SAR1097
MSHR1132:
SAMSHR1132_09700
MSSA476:
SAS1058
Mu3:
SAHV_1115
Mu50:
SAV1124
MW2:
MW1006
RF122:
SAB0988
ST398:
SAPIG1120 (rsmD)
T0131:
SAT0131_01162
TCH60:
HMPREF0772_12109
TW20:
SATW20_11180
USA300_TCH1516:
USA300HOU_1061
VC40:
SAVC_04780
⊟Genome Viewer[edit | edit source]
| COL chromosome | |
| N315 chromosome | |
| NCTC8325 chromosome | |
| Newman chromosome | |
| USA300_FPR3757 chromosome |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
N315 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
NCTC8325 ------------------------MDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
Newman MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
USA300_FPR3757 MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
************************************
COL GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
N315 GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
NCTC8325 GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
Newman GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
USA300_FPR3757 GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
************************************************************
COL YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
N315 YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
NCTC8325 YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
Newman YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
USA300_FPR3757 YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
************************************************************