⊟Summary

• pan ID^?: SAUPAN003351000
• symbol^?: rsmD
• description^?: methyltransferase

  descriptions from strain specific annotations:

  • methyltransferase
  • S-adenosylmethionine-dependent methyltransferase, putative
  • 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
  • Ribosomal RNA small subunit methyltransferase D
  • site-specific DNA-methyltransferase (adenine-specific)
  • methyltransferase small domain-containing protein
  • putative methylase
  • RNA methyltransferase, RsmD family
  • RsmD family RNA methyltransferase
• strand^?: +
• coordinates^?: 3717696..3718247
• synteny block^?: BlockID0024350
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1133
N315:
SA0972
NCTC8325:
SAOUHSC_01074
Newman:
NWMN_0987
USA300_FPR3757:
SAUSA300_1023
04-02981:
SA2981_1080
08BA02176:
C248_1150
11819-97:
MS7_1080
6850:
RSAU_001008
71193:
ST398NM01_1120
ECT-R 2:
ECTR2_978
ED133:
SAOV_1065
ED98:
SAAV_1090
HO 5096 0412:
SAEMRSA15_09530
JH1:
SaurJH1_1205
JH9:
SaurJH9_1183
JKD6008:
SAA6008_01078
JKD6159:
SAA6159_00978
LGA251:
SARLGA251_10360
M013:
M013TW_1055
MRSA252:
SAR1097
MSHR1132:
SAMSHR1132_09700
MSSA476:
SAS1058
Mu3:
SAHV_1115
Mu50:
SAV1124
MW2:
MW1006
RF122:
SAB0988
ST398:
SAPIG1120 (rsmD)
T0131:
SAT0131_01162
TCH60:
HMPREF0772_12109
TW20:
SATW20_11180
USA300_TCH1516:
USA300HOU_1061
VC40:
SAVC_04780

⊟Genome Viewer

COL chromosome
N315 chromosome
NCTC8325 chromosome
Newman chromosome
USA300_FPR3757 chromosome

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
  N315            MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
  NCTC8325        ------------------------MDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
  Newman          MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
  USA300_FPR3757  MRVIAGKHKSKALESMEGRNTRPTMDKVKEGIFNSLYDVSGIGLDLFAGSGALGIEALSR
                                          ************************************
  
  COL             GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
  N315            GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
  NCTC8325        GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
  Newman          GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
  USA300_FPR3757  GMDKVIFVDQNFKAVKVIKSNLANLDLEAQSEVYKNNADRALKALSKRDIQFDVIFLDPP
                  ************************************************************
  
  COL             YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
  N315            YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
  NCTC8325        YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
  Newman          YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
  USA300_FPR3757  YNKGLIDKALKLISEFNLLKENGIIVCEFSNHEEIDYQPFNMIKRYHYGLTDTLLLEKGE
                  ************************************************************