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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003358000
- symbol?: isdB
- synonym:
- description?: iron-regulated surface determinant protein B
- iron-regulated surface determinant protein B
- heme uptake protein IsdB
- iron-regulated heme-iron binding protein IsdB
- iron transport associated domain-containing protein
- LPXTG cell wall surface anchor protein
- neurofilament protein
- cell surface receptor IsdB
- Cell surface receptor IsdB for hemoglobin and hemoglobin-haptoglobin complexes
- cell wall anchor domain-containing protein
- iron-regulated cell wall-anchored protein SirH
- LPXTG-motif cell wall anchor domain-containing protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3723033..3725048
- synteny block?: BlockID0024410
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1085 (isdB)
08BA02176:
C248_1155 (isdB)
11819-97:
MS7_1085 (isdB)
6850:
RSAU_001013 (isdB)
71193:
ST398NM01_1125
ECT-R 2:
ECTR2_983
ED133:
SAOV_1125c (isdA)
ED98:
SAAV_1095 (isdB)
HO 5096 0412:
SAEMRSA15_09580 (isdB)
JH1:
SaurJH1_1210
JH9:
SaurJH9_1188
JKD6008:
SAA6008_01083 (isdB)
JKD6159:
SAA6159_00983 (isdB)
LGA251:
SARLGA251_10410 (isdB)
M013:
M013TW_1060
MRSA252:
SAR1102 (isdB)
MSHR1132:
SAMSHR1132_09750
MSSA476:
SAS1063
Mu3:
SAHV_1120
Mu50:
SAV1129
MW2:
MW1011 (isdB)
RF122:
SAB0993c (isdA)
ST398:
SAPIG1125
T0131:
SAT0131_01167
TCH60:
HMPREF0772_12104 (isdB)
TW20:
SATW20_11230 (isdB)
USA300_TCH1516:
—
VC40:
SAVC_04805
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEETGGTNTEAQPKTEAVA
N315 MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEETGGTNTEAQPKTEAVA
NCTC8325 MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEETGGTNTEAQPKTEAVA
Newman MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEETGGTNTEAQPKTEAVA
USA300_FPR3757 MNKQQKEFKSFYSIRKSSLGVASVAISTLLLLMSNGEAQAAAEETGGTNTEAQPKTEAVA
************************************************************
COL SPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEVKAPKETKEVKPAAKATNN
N315 SPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEVKAPKETKAVKPAAKATNN
NCTC8325 SPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEVKAPKETKEVKPAAKATNN
Newman SPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEVKAPKETKEVKPAAKATNN
USA300_FPR3757 SPTTTSEKAPETKPVANAVSVSNKEVEAPTSETKEAKEVKEVKAPKETKEVKPAAKATNN
************************************************* **********
COL TYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKKDGTQQFYHYASSVKPARVIFTD
N315 TYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKENGEQQFYHYASSVKPARVIFTD
NCTC8325 TYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKKDGTQQFYHYASSVKPARVIFTD
Newman TYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKKDGTQQFYHYASSVKPARVIFTD
USA300_FPR3757 TYPILNQELREAIKNPAIKDKDHSAPNSRPIDFEMKKKDGTQQFYHYASSVKPARVIFTD
*************************************::* *******************
COL SKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVKDYAYIRFSVSNGTKAVKIVSST
N315 SKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVKDYAYIRFSVSNGTKAVKIVSST
NCTC8325 SKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVKDYAYIRFSVSNGTKAVKIVSST
Newman SKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVKDYAYIRFSVSNGTKAVKIVSST
USA300_FPR3757 SKPEIELGLQSGQFWRKFEVYEGDKKLPIKLVSYDTVKDYAYIRFSVSNGTKAVKIVSST
************************************************************
COL HFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAEKLLAPYKKAKTLERQVYELNKIQD
N315 HFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAEKLLAPYKKAKTLERQVYELNKIQD
NCTC8325 HFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAEKLLAPYKKAKTLERQVYELNKIQD
Newman HFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAEKLLAPYKKAKTLERQVYELNKIQD
USA300_FPR3757 HFNNKEEKYDYTLMEFAQPIYNSADKFKTEEDYKAEKLLAPYKKAKTLERQVYELNKIQD
************************************************************
COL KLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQNVQPTNEKMTDLQDTKYVVYESVENNE
N315 KLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQNVQPTNEKMTDLQDTKYVVYESVENNE
NCTC8325 KLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQNVQPTNEKMTDLQDTKYVVYESVENNE
Newman KLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQNVQPTNEKMTDLQDTKYVVYESVENNE
USA300_FPR3757 KLPEKLKAEYKKKLEDTKKALDEQVKSAITEFQNVQPTNEKMTDLQDTKYVVYESVENNE
************************************************************
COL SMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPY
N315 SMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPY
NCTC8325 SMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPY
Newman SMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPY
USA300_FPR3757 SMMDTFVKHPIKTGMLNGKKYMVMETTNDDYWKDFMVEGQRVRTISKDAKNNTRTIIFPY
************************************************************
COL VEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKANTDKSNKKEQQDNSAKKEATPAT
N315 VEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKANTDKSNKKEQQDNSAKKEATPAT
NCTC8325 VEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKANTDKSNKKEQQDNSAKKEATPAT
Newman VEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKANTDKSNKKEQQDNSAKKEATPAT
USA300_FPR3757 VEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEAFTKANTDKSNKKEQQDNSAKKEATPAT
************************************************************
COL PSKPTPSPVEKESQKQDSQKDDNKQLPSVEKENDASSESGKDKTPATKPTKGEVESSSTT
N315 PSKPTPSPVEKESQKQDSQKDDNKQLPSVEKENDASSESGKDKTPATKPTKGEVESSSTT
NCTC8325 PSKPTPSPVEKESQKQDSQKDDNKQLPSVEKENDASSESGKDKTPATKPTKGEVESSSTT
Newman PSKPTPSPVEKESQKQDSQKDDNKQLPSVEKENDASSESGKDKTPATKPTKGEVESSSTT
USA300_FPR3757 PSKPTPSPVEKESQKQDSQKDDNKQLPSVEKENDASSESGKDKTPATKPTKGEVESSSTT
************************************************************
COL PTKVVSTTQNVAKPTTASSKTTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNK
N315 PTKVVSTTQNVAKPTTASSKTTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNK
NCTC8325 PTKVVSTTQNVAKPTTASSKTTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNK
Newman PTKVVSTTQNVAKPTTASSKTTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNK
USA300_FPR3757 PTKVVSTTQNVAKPTTASSKTTKDVVQTSAGSSEAKDSAPLQKANIKNTNDGHTQSQNNK
************************************************************
COL NTQENKAKSLPQTGEESNKDMTLPLMALLALSSIVAFVLPRKRKN
N315 NTQENKAKSLPQTGEESNKDMTLPLMALLALSSIVAFVLPRKRKN
NCTC8325 NTQENKAKSLPQTGEESNKDMTLPLMALLALSSIVAFVLPRKRKN
Newman NTQENKAKSLPQTGEESNKDMTLPLMALLALSSIVAFVLPRKRKN
USA300_FPR3757 NTQENKAKSLPQTGEESNKDMTLPLMALLALSSIVAFVLPRKRKN
*********************************************