PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003389000
• symbol^?: sdhB
• synonym:
• description^?: succinate dehydrogenase iron-sulfur subunit

  descriptions from strain specific annotations:

  • succinate dehydrogenase iron-sulfur subunit
  • succinate dehydrogenase iron-sulfur protein SdhB
  • putative succinate dehydrogenase iron-sulfurprotein
  • succinate dehydrogenase and fumarate reductase iron-sulfur family protein
  • Succinate dehydrogenase iron-sulfur protein
  • Succinate dehydrogenase subunit B
• strand^?: +
• coordinates^?: 3751699..3752514
• synteny block^?: BlockID0024720
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1160 (sdhB)
N315:
SA0996 (sdhB)
NCTC8325:
SAOUHSC_01105 (sdhB)
Newman:
NWMN_1062 (sdhB)
USA300_FPR3757:
SAUSA300_1048 (sdhB)
04-02981:
SA2981_1105 (sdhB)
08BA02176:
C248_1178 (sdhB)
11819-97:
MS7_1106
6850:
RSAU_001033 (sdhB)
71193:
ST398NM01_1145
ECT-R 2:
ECTR2_1003
ED133:
SAOV_1146
ED98:
SAAV_1117 (sdhB)
HO 5096 0412:
SAEMRSA15_09790 (sdhB)
JH1:
SaurJH1_1230 (sdhB)
JH9:
SaurJH9_1208 (sdhB)
JKD6008:
SAA6008_01103 (sdhB)
JKD6159:
SAA6159_01003 (sdhB)
LGA251:
SARLGA251_10610 (sdhB)
M013:
M013TW_1082
MRSA252:
SAR1122 (sdhB)
MSHR1132:
SAMSHR1132_09950
MSSA476:
SAS1083 (sdhB)
Mu3:
SAHV_1140 (sdhB)
Mu50:
SAV1149 (sdhB)
MW2:
MW1032 (sdhB)
RF122:
SAB1013 (sdhB)
ST398:
SAPIG1145
T0131:
SAT0131_01192 (rpoA)
TCH60:
HMPREF0772_12084 (sdhB)
TW20:
SATW20_11430 (sdhB)
USA300_TCH1516:
USA300HOU_1085 (sdhB)
VC40:
SAVC_04910 (sdhB)

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIR
  N315            MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIR
  NCTC8325        MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIR
  Newman          MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIR
  USA300_FPR3757  MTEQSVKNTPQHETQSKPKQKTVKLIIKRQDTSDSKPYEETFEIPYRENLNVIACLMEIR
                  ************************************************************
  
  COL             RNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFP
  N315            RNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFP
  NCTC8325        RNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFP
  Newman          RNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFP
  USA300_FPR3757  RNPVNIKGEKTTPVVWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPIRLEPMNTFP
                  ************************************************************
  
  COL             VIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEV
  N315            VIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEV
  NCTC8325        VIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEV
  Newman          VIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEV
  USA300_FPR3757  VIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKCMTCGVCLEV
                  ************************************************************
  
  COL             CPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPK
  N315            CPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPK
  NCTC8325        CPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPK
  Newman          CPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPK
  USA300_FPR3757  CPNVTENNKFVGAQAISQVRLFNLHPTGSMTKDERLNALMGTGGLQQCGNSQNCVNACPK
                  ************************************************************
  
  COL             GIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
  N315            GIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
  NCTC8325        GIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
  Newman          GIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
  USA300_FPR3757  GIPLTTSIAAMNRETTFHMFKSFFGSDHEVE
                  *******************************