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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003418000
- symbol?: hla
- synonym:
- description?: alpha-hemolysin
- alpha-hemolysin
- alpha-hemolysin precursor
- alpha-hemolysin, precursor
- beta-channel forming cytolysin
- alpha-hemolysin (Alpha-toxin) (Alpha-HL)
- alpha-hemolysin precursor (pseudogene)
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3767663..3768622
- synteny block?: BlockID0024990
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1119
08BA02176:
C248_1190
11819-97:
MS7_1118 (hly)
6850:
RSAU_001044 (hla)
71193:
ST398NM01_1158
ECT-R 2:
ECTR2_1018
ED133:
SAOV_1161c (hla)
ED98:
SAAV_1131 (hlY)
HO 5096 0412:
SAEMRSA15_09940 (hla)
JH1:
SaurJH1_1246
JH9:
SaurJH9_1222
JKD6008:
SAA6008_01115 (hlY)
JKD6159:
SAA6159_01014 (hlY)
LGA251:
SARLGA251_10730 (hla)
M013:
M013TW_1094
MRSA252:
SAR1136 (hla)
MSHR1132:
SAMSHR1132_10050
MSSA476:
SAS1097
Mu3:
SAHV_1153
Mu50:
SAV1163
MW2:
MW1044
RF122:
SAB1027c (hla)
ST398:
SAPIG1158
T0131:
SAT0131_01205
TCH60:
HMPREF0772_12071 (hly)
TW20:
SATW20_11550 (hla)
USA300_TCH1516:
USA300HOU_1099 (hly)
VC40:
SAVC_04965
⊟Genome Viewer[edit | edit source]
COL | |
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
N315 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
NCTC8325 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
Newman MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
USA300_FPR3757 MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGM
************************************************************
COL HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
N315 HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
NCTC8325 HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
Newman HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
USA300_FPR3757 HKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNE
************************************************************
COL VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
N315 VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
NCTC8325 VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
Newman VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
USA300_FPR3757 VAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFK
************************************************************
COL TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
N315 TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAAENFLDPN
NCTC8325 TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
Newman TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
USA300_FPR3757 TILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPN
*****************************************************:******
COL KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
N315 KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
NCTC8325 KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
Newman KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
USA300_FPR3757 KASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKW
************************************************************
COL IDRSSERYKIDWEKEEMTN
N315 TDRSSERYKIDWEKEEMTN
NCTC8325 IDRSSERYKIDWEKEEMTN
Newman IDRSSERYKIDWEKEEMTN
USA300_FPR3757 IDRSSERYKIDWEKEEMTN
******************