Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN003427000
- symbol?: ssl13
- synonym:
- description?: staphylococcal superantigen-like protein 13
- staphylococcal superantigen-like protein 13
- superantigen-like protein
- superantigen-like protein SSL13
- Exotoxin
- putative exotoxin
- staphylococcal/Streptococcal toxin, beta-grasp domain protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3776271..3777261
- synteny block?: BlockID0025080
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1123
08BA02176:
C248_1193
11819-97:
MS7_1122
6850:
RSAU_001047
71193:
ST398NM01_1161
ECT-R 2:
ECTR2_1021
ED133:
SAOV_1165c
ED98:
SAAV_1135
HO 5096 0412:
SAEMRSA15_09980
JH1:
SaurJH1_1250
JH9:
SaurJH9_1225
JKD6008:
SAA6008_01119
JKD6159:
SAA6159_01017
LGA251:
SARLGA251_10760
M013:
M013TW_1098
MRSA252:
SAR1140
MSHR1132:
SAMSHR1132_10080
MSSA476:
SAS1100
Mu3:
SAHV_1157
Mu50:
SAV1167
MW2:
MW1048
RF122:
SAB1031c
ST398:
SAPIG1161
T0131:
SAT0131_01210
TCH60:
HMPREF0772_12067
TW20:
SATW20_11590
USA300_TCH1516:
USA300HOU_1104
VC40:
SAVC_04985
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL
N315 MNNNITKKIILSTTLLLLGTAFTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL
NCTC8325 MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL
Newman MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL
USA300_FPR3757 MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYL
********************* **************************************
COL TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS
N315 TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS
NCTC8325 TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS
Newman TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS
USA300_FPR3757 TFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDS
************************************************************
COL FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR
N315 FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR
NCTC8325 FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR
Newman FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR
USA300_FPR3757 FALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIR
************************************************************
COL QTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS
N315 QTLIKSKKLYNNSYNKGQIKITGTDNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS
NCTC8325 QTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS
Newman QTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS
USA300_FPR3757 QTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKS
***********************:************************************
COL N
N315 N
NCTC8325 N
Newman N
USA300_FPR3757 N
*