PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003498000
• symbol^?: def2
• synonym:
• description^?: peptide deformylase

  descriptions from strain specific annotations:

  • peptide deformylase
  • polypeptide deformylase def2
  • peptide deformylase 1
  • Peptide deformylase-like protein
  • polypeptide deformylase family protein
  • putative polypeptide deformylase
• strand^?: +
• coordinates^?: 3838075..3838563
• synteny block^?: BlockID0025770
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1227 (def2)
N315:
SA1058
NCTC8325:
SAOUHSC_01182
Newman:
NWMN_1125 (def)
USA300_FPR3757:
SAUSA300_1108 (def)
04-02981:
SA2981_1173
08BA02176:
C248_1245 (def)
11819-97:
MS7_1173
6850:
RSAU_001097 (def2)
71193:
ST398NM01_1214
ECT-R 2:
ECTR2_1071
ED133:
SAOV_1218
ED98:
SAAV_1187 (def2)
HO 5096 0412:
SAEMRSA15_10480 (def)
JH1:
SaurJH1_1299
JH9:
SaurJH9_1274
JKD6008:
SAA6008_01170 (def2)
JKD6159:
SAA6159_01068 (def2)
LGA251:
SARLGA251_11260 (def)
M013:
M013TW_1153
MRSA252:
SAR1191 (def)
MSHR1132:
SAMSHR1132_10560
MSSA476:
SAS1149
Mu3:
SAHV_1205
Mu50:
SAV1215
MW2:
MW1098
RF122:
SAB1079 (def)
ST398:
SAPIG1214 (def)
T0131:
SAT0131_01264 (moeB)
TCH60:
HMPREF0772_12017 (def)
TW20:
SATW20_12090 (def)
USA300_TCH1516:
USA300HOU_1152 (def2)
VC40:
SAVC_05240

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI
  N315            MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI
  NCTC8325        MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI
  Newman          MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI
  USA300_FPR3757  MAIKKLVPASHPILTKKAQAVKTFDDSLKRLLQDLEDTMYAQEAAGLCAPQINQSLQVAI
                  ************************************************************
  
  COL             IDMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVEL
  N315            IDMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVEL
  NCTC8325        IDMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVEL
  Newman          IDMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVEL
  USA300_FPR3757  IDMEMEGLLQLVNPKIISQSNETITDLEGSITLPDVYGEVTRSKMIVVESYDVNGNKVEL
                  ************************************************************
  
  COL             TAHEDVARMILHIIDQMNGIPFTERADRILTDKEVEAYFIND
  N315            TAHEDVARMILHIIDQMNGIPFTERADRILTDKEVEAYFIND
  NCTC8325        TAHEDVARMILHIIDQMNGIPFTERADRILTDKEVEAYFIND
  Newman          TAHEDVARMILHIIDQMNGIPFTERADRILTDKEVEAYFIND
  USA300_FPR3757  TAHEDVARMILHIIDQMNGIPFTERADRILTDKEVEAYFIND
                  ******************************************