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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003534000
- symbol?: —
- synonym:
- description?: membrane protein
- membrane protein
- YfhO family protein
- putative membrane protein YfhO
- integral membrane protein
- pseudogene
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 3871625..3874231
- synteny block?: BlockID0026110
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1200
08BA02176:
C248_1273
11819-97:
MS7_1200
6850:
RSAU_001124
71193:
ST398NM01_1242
ECT-R 2:
ECTR2_1098
ED133:
SAOV_1245c
ED98:
SAAV_1216
HO 5096 0412:
SAEMRSA15_10750
JH1:
SaurJH1_1326
JH9:
SaurJH9_1301
JKD6008:
SAA6008_01197 (yfhO)
JKD6159:
SAA6159_01097 (yfhO)
LGA251:
SARLGA251_11530
M013:
M013TW_1180
MRSA252:
SAR1218
MSHR1132:
SAMSHR1132_10850
MSSA476:
SAS1176
Mu3:
SAHV_1232
Mu50:
SAV1242
MW2:
MW1125
RF122:
SAB1106c
ST398:
SAPIG1242
T0131:
SAT0131_01292
TCH60:
HMPREF0772_11989
TW20:
SATW20_12360
USA300_TCH1516:
USA300HOU_1173
VC40:
SAVC_05375
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLY
N315 MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLY
NCTC8325 MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLY
Newman MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLY
USA300_FPR3757 MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLY
************************************************************
COL EHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPT
N315 EHLSSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPT
NCTC8325 EHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPT
Newman EHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPT
USA300_FPR3757 EHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPT
*** ********************************************************
COL NQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGMSTVVIYFNFTWSFYGNLLYL
N315 NQLIMAMIRAIITFVVTFYLFKILHFKRSTNMIATILYGMSTVVIYFNFTWSFYGNLLYL
NCTC8325 NQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGMSTVVIYFNFTWSFYGNLLYL
Newman NQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGMSTVVIYFNFTWSFYGNLLYL
USA300_FPR3757 NQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGMSTVVIYFNFTWSFYGNLLYL
*****************************:******************************
COL LPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVS
N315 LPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVS
NCTC8325 LPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVS
Newman LPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVS
USA300_FPR3757 LPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVS
************************************************************
COL RTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGF
N315 RTQKFICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGF
NCTC8325 RTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGF
Newman RTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGF
USA300_FPR3757 RTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGF
****:*******************************************************
COL YITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYIL
N315 YITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYIL
NCTC8325 YITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYIL
Newman YITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYIL
USA300_FPR3757 YITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYIL
************************************************************
COL ALSSSALCGLFIQHLSTLNMKYYLIRTIPVCIIAILYVLLSPTHPLALIVGIILLIVLAV
N315 ALSSSALCGLFIQHLSTLNMKYYLIRTIPVSIIALLYVLLSPTHPLALIVGIILLMVLAV
NCTC8325 ALSSSALCGLFIQHLSTLNMKYYLIRTIPVCIIAILYVLLSPTHPLALIVGIILLIVLAV
Newman ALSSSALCGLFIQHLSTLNMKYYLIRTIPVCIIAILYVLLSPTHPLALIVGIILLIVLAV
USA300_FPR3757 ALSSSALCGLFIQHLSTLNMKYYLIRTIPVCIIAILYVLLSPTHPLALIVGIILLIVLAV
******************************.***:********************:****
COL ILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQL
N315 ILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQL
NCTC8325 ILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQL
Newman ILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQL
USA300_FPR3757 ILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQL
************************************************************
COL IKKINQNATGSFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPID
N315 IKKINQNATGPFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPID
NCTC8325 IKKINQNATGSFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPID
Newman IKKINQNATGSFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPID
USA300_FPR3757 IKKINQNATGSFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPID
**********.*************************************************
COL KNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPS
N315 KNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYRFKINSEHKDNKVRWIHSKNTIHYPS
NCTC8325 KNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPS
Newman KNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPS
USA300_FPR3757 KNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPS
********************************** ***:*********************
COL AHITNKVFSNKELKSPLDKEQAMLQGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQS
N315 AHITNKVFSNKELKSPLDKEQAMLQGIVSNNTKDVNTHFKANKNLLSDSTIKLNSSAWQS
NCTC8325 AHITNKVFSNKELKSPLDKEQAMLQGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQS
Newman AHITNKVFSNKELKSPLDKEQAMLQGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQS
USA300_FPR3757 AHITNKVFSNKELKSPLDKEQAMLQGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQS
******************************* ***********************:****
COL PTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLT
N315 PTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLT
NCTC8325 PTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLT
Newman PTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLT
USA300_FPR3757 PTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLT
************************************************************
COL YKYRRVVTPVTIRIKAPDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTK
N315 YKYRRFVTPVTIRIKASDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTK
NCTC8325 YKYRRVVTPVTIRIKAPDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTK
Newman YKYRRVVTPVTIRIKAPDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTK
USA300_FPR3757 YKYRRVVTPVTIRIKAPDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTK
*****.**********.*******************************************
COL HGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYT
N315 QGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVAQVNGVMTGIKAPKNITKIQLSYT
NCTC8325 HGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYT
Newman HGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYT
USA300_FPR3757 HGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYT
:*********************************** ***********************
COL PPYYYLLITITIFGIICSIIFTRWARQK
N315 PPYYYLLITITIFGIICSIIFTRWARQK
NCTC8325 PPYYYLLITITIFGIICSIIFTRWARQK
Newman PPYYYLLITITIFGIICSIIFTRWARQK
USA300_FPR3757 PPYYYLLITITIFGIICSIIFTRWARQK
****************************