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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1135 [new locus tag: SAUSA300_RS06145 ]
- pan locus tag?: SAUPAN003534000
- symbol: SAUSA300_1135
- pan gene symbol?: —
- synonym:
- product: hypothetical protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1135 [new locus tag: SAUSA300_RS06145 ]
- symbol: SAUSA300_1135
- product: hypothetical protein
- replicon: chromosome
- strand: -
- coordinates: 1242081..1244687
- length: 2607
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3913679 NCBI
- RefSeq: YP_493832 NCBI
- BioCyc: see SAUSA300_RS06145
- MicrobesOnline: 1292650 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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2581GTGTTAAAAAAGTGGCTAAATTCAAACGTCAAACAATTCTTTGTTATAACTTTCATTAGT
GTAATATTAACGCTTATTTTATTTTCTACTCATATCTATGATTATATTGTGAATGGTACT
GTTTTTAGCGGGGCTGGAGATGGATTCCGTCAAATGATGCCATTTCAAATGTATTTGTAT
GAACATCTACGTAGTTTTTCTAGTTTATATGATGCATCGTTTGGATTAGGTGGCGATTAT
ATGAAAGGACTATCATATTATTATTCGCTGTCACCTTTAATGTGGCTAAATTTTCTATTC
ATTAAAATAGGAGAAACGGTTGGTATATTTAATCCGACGACAATACATTTTTGGCCGACA
AACCAACTTATTATGGCTATGATACGAGCTATCATAACATTTGTCGTGACCTTCTACTTA
TTTAAAATATTACACTTTAAACGCTCAGCAAATATGATCGCTACGATTTTATACGGCATG
TCAACTGTCGTTATATACTTTAATTTTACTTGGTCATTTTATGGAAATTTATTATATTTA
TTGCCATTATCGATTCTTGGTTTGGAAAGATATTTTCAACAACGCAAAATCGGTATTTTC
ATTGTTGCGATAGCCTTAACACTATTTAGCAATTTTTATTTCAGTTATTATCAAGCTATT
ATTATAGGTTGCTACTATTTATATCGACTCATTTTCACTTACAAATATGACATTGTCTCT
AGAACACAAAAATTAATTTGCGTCATATCTGCTACAGTTTTGAGTGTGTTATCAAGTGTA
TTTGGTTTATTCACTGGCATTTCTGCGTTTTTGGAAAATGACAGAAAGCAAAATCCCAAT
GTTGATATACCGTTTTTGACACCACTTGATTATCATTATTTTTTCTTTAGCGATGGATTT
TATATTACGATTTCAATTCTTACTATCGTTGCATTATTGTCATTCAAACTGTATCGTTTT
TACTTTTATAGACTTTTCGCAATAGTAACATGGATATTATTTATAGGTTCATTATCACAG
TATTTCGACAGTGCTTTTAATGGTTTTTCATTTCCAGAAAGGCGTTGGGTGTATATCTTA
GCACTATCATCAAGTGCTCTTTGCGGATTGTTTATTCAACATTTATCAACATTAAATATG
AAATATTATTTAATCAGAACAATACCCGTATGCATCATCGCAATACTTTATGTATTACTA
TCACCGACACACCCACTTGCACTTATAGTAGGTATTATCCTGCTAATAGTGCTTGCCGTT
ATTTTAAAATTTAGTTTATGGCGTTATAAAAAATTAACCGTTGCAATATTAGTATTAATC
GTTATGATTCAACAAATCGTCATTTTAGATAACAACAAAAACATGGCAATCAAACCTTAT
CAACAATCATTATCAACGTTGAAACAACATGATTACCATAGTAACTATGTAAACCAGCTT
ATAAAAAAGATAAATCAAAATGCAACAGGCTCATTTAATCGCATTGATTATATGTCAGAC
TATGCATTAAATTCACCATTTATATATCATTATAATGGCATTTCATTATATTCTAGTATT
TTTAATGGAGACATTTTAAAATATTATGACAAGACACTCCAAATTAATATGCCAATCGAT
AAAAACAGCACTTATAGATTACTTGGCAATCGTCAAAATTTACTATCACTTTGGAATGTT
AATGATCGAATTAGAGTGAATCATGATGACAACTTACCATATGGATTTAAAATTAAGTCT
GAACACAAAGACAATAAAGTTCGTTGGATTCATTCTAAAAATACCATCCATTATCCAAGT
GCACATATTACAAATAAGGTCTTTTCCAATAAAGAATTAAAATCTCCATTAGATAAAGAA
CAAGCAATGTTGCAAGGGATTGTTTCTAACAATATTAAAGATGTTAATACACATTTTAAA
GCCAATAAAAATTTACTATCAGATTCAACAATTAAATTAAATAGTGCAGCCTGGCAATCT
CCTACAAAACATTTATTACAAGTTAAACAAAATAATGGTGGTCTAACTGTACAGTTGCCA
AAATCAGTTTCTAATCAATTTAAAGATTTGTATTTTGAAATGGATTTAGAATTACTTTCG
CCGGATAAAGCTCATGATGTTAAAGTGAATGAATATACACAAGAAAGAAATAAACTCACT
TATAAATATCGACGCGTTGTAACACCCGTAACGATACGCATTAAAGCTCCAGATAGAATT
AGATTATCATTGCCTAAAGGTAAGTATCGAGTAAATTTAAAAGGGATATACGGCGAAGAT
TATACCACGCTTAAAGACGCTTCAAATTCATTAGAAGCTGTCAAAGTTAGTAAGACAAAG
CATGGTTATACTATTACTAAAAATAAAAATTCATCTGGGTATATTGTTTTGCCAACAGCA
TATAATCAAGGTATGAAAGCGACATCAGGTGATCAAAGTCTTAAAGTTGAACAAGTAAAT
GGTGTTATGACCGGCATTAAAGCACCTAAAAATATAACAAAGATTCAATTGAGCTATACC
CCACCATACTATTATTTACTTATAACAATTACTATATTTGGCATTATATGTAGTATTATT
TTCACGAGATGGGCAAGACAAAAATAA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1135 [new locus tag: SAUSA300_RS06145 ]
- symbol: SAUSA300_1135
- description: hypothetical protein
- length: 868
- theoretical pI: 10.0434
- theoretical MW: 100430
- GRAVY: 0.138364
⊟Function[edit | edit source]
- TIGRFAM: Cellular processes Sporulation and germination stage III sporulation protein AF (TIGR02896; HMM-score: 15.7)
- TheSEED :
- FIG01108412: hypothetical protein
- PFAM: GT-C (CL0111) YfhO; Bacterial membrane protein YfhO (PF09586; HMM-score: 535.5)and 1 moreno clan defined DUF4179; Domain of unknown function (DUF4179) (PF13786; HMM-score: 7.9)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 0
- Cytoplasmic Membrane Score: 10
- Cellwall Score: 0
- Extracellular Score: 0
- Internal Helices: 12
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.074821
- TAT(Tat/SPI): 0.000462
- LIPO(Sec/SPII): 0.006824
- predicted transmembrane helices (TMHMM): 12
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MLKKWLNSNVKQFFVITFISVILTLILFSTHIYDYIVNGTVFSGAGDGFRQMMPFQMYLYEHLRSFSSLYDASFGLGGDYMKGLSYYYSLSPLMWLNFLFIKIGETVGIFNPTTIHFWPTNQLIMAMIRAIITFVVTFYLFKILHFKRSANMIATILYGMSTVVIYFNFTWSFYGNLLYLLPLSILGLERYFQQRKIGIFIVAIALTLFSNFYFSYYQAIIIGCYYLYRLIFTYKYDIVSRTQKLICVISATVLSVLSSVFGLFTGISAFLENDRKQNPNVDIPFLTPLDYHYFFFSDGFYITISILTIVALLSFKLYRFYFYRLFAIVTWILFIGSLSQYFDSAFNGFSFPERRWVYILALSSSALCGLFIQHLSTLNMKYYLIRTIPVCIIAILYVLLSPTHPLALIVGIILLIVLAVILKFSLWRYKKLTVAILVLIVMIQQIVILDNNKNMAIKPYQQSLSTLKQHDYHSNYVNQLIKKINQNATGSFNRIDYMSDYALNSPFIYHYNGISLYSSIFNGDILKYYDKTLQINMPIDKNSTYRLLGNRQNLLSLWNVNDRIRVNHDDNLPYGFKIKSEHKDNKVRWIHSKNTIHYPSAHITNKVFSNKELKSPLDKEQAMLQGIVSNNIKDVNTHFKANKNLLSDSTIKLNSAAWQSPTKHLLQVKQNNGGLTVQLPKSVSNQFKDLYFEMDLELLSPDKAHDVKVNEYTQERNKLTYKYRRVVTPVTIRIKAPDRIRLSLPKGKYRVNLKGIYGEDYTTLKDASNSLEAVKVSKTKHGYTITKNKNSSGYIVLPTAYNQGMKATSGDQSLKVEQVNGVMTGIKAPKNITKIQLSYTPPYYYLLITITIFGIICSIIFTRWARQK
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
- MicrobesOnline: no polycistronic organisation predicted
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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