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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003613000
- symbol?: glpD
- synonym:
- description?: aerobic glycerol-3-phosphate dehydrogenase
- aerobic glycerol-3-phosphate dehydrogenase
- glycerol-3-phosphate dehydrogenase/oxidase
- aerobic glycerol-3-phosphate dehydrogenase GlpD
- DNA-directed DNA polymerase III subunit gamma and tau
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 3954076..3955804
- synteny block?: BlockID0026840
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1258 (glpD)
08BA02176:
C248_1335 (glpD)
11819-97:
MS7_1258 (glpD)
6850:
RSAU_001184 (glpD)
71193:
ST398NM01_1303
ECT-R 2:
ECTR2_1158
ED133:
SAOV_1302
ED98:
SAAV_1275 (glpD)
HO 5096 0412:
SAEMRSA15_11350 (glpD)
JH1:
SaurJH1_1386
JH9:
SaurJH9_1360
JKD6008:
SAA6008_01255 (glpD)
JKD6159:
SAA6159_01155 (glpD)
LGA251:
SARLGA251_12110 (glpD)
M013:
M013TW_1242
MRSA252:
SAR1276 (glpD)
MSHR1132:
SAMSHR1132_11430
MSSA476:
SAS1234
Mu3:
SAHV_1291 (glpD)
Mu50:
SAV1302 (glpD)
MW2:
MW1184 (glpD)
RF122:
SAB1162 (glpD)
ST398:
SAPIG1303
T0131:
SAT0131_01356 (tcaA)
TCH60:
HMPREF0772_11926 (glpD)
TW20:
SATW20_12940 (glpD)
USA300_TCH1516:
USA300HOU_1232 (glpD)
VC40:
SAVC_05700
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL ----------------MALSTFKREHIKKNLRNDEYDLVIIGGGITGAGIALDASERGMK
N315 MWDKSLVFTFFRRRFGMALSTFKREHIKKNLRNDEYDLVIIGGGITGAGIALDASERGMK
NCTC8325 ----------------MALSTFKREHIKKNLRNDEYDLVIIGGGITGAGIALDASERGMK
Newman MWDKSLVFTFFRRRFGMALSTFKREHIKKNLRNDEYDLVIIGGGITGAGIALDASERGMK
USA300_FPR3757 ----------------MALSTFKREHIKKNLRNDEYDLVIIGGGITGAGIALDASERGMK
********************************************
COL VALVEMQDFAQGTSSRSTKLVHGGLRYLKQFQIGVVAETGKERAIVYENGPHVTTPEWML
N315 VALVEMQDFAQGTSSRSTKLVHGGLRYLKQFQIGVVAETGKERAIVYENGPHVTTPEWML
NCTC8325 VALVEMQDFAQGTSSRSTKLVHGGLRYLKQFQIGVVAETGKERAIVYENGPHVTTPEWML
Newman VALVEMQDFAQGTSSRSTKLVHGGLRYLKQFQIGVVAETGKERAIVYENGPHVTTPEWML
USA300_FPR3757 VALVEMQDFAQGTSSRSTKLVHGGLRYLKQFQIGVVAETGKERAIVYENGPHVTTPEWML
************************************************************
COL LPMHKGGTFGKFSTSIGLGMYDRLAGVKKSERKKMLSKKETLAKEPLVKKEGLKGGGYYV
N315 LPMHKGGTFGKFSTSIGLGMYDRLAGVKKSERKKMLSKKETLAKEPLVKKEGLKGGGYYV
NCTC8325 LPMHKGGTFGKFSTSIGLGMYDRLAGVKKSERKKMLSKKETLAKEPLVKKEGLKGGGYYV
Newman LPMHKGGTFGKFSTSIGLGMYDRLAGVKKSERKKMLSKKETLAKEPLVKKEGLKGGGYYV
USA300_FPR3757 LPMHKGGTFGKFSTSIGLGMYDRLAGVKKSERKKMLSKKETLAKEPLVKKEGLKGGGYYV
************************************************************
COL EYRTDDARLTIEVMKRAAEKGAEIINYTKSEHFTYDKNQQVNGVKVIDKLTNENYTIKAK
N315 EYRTDDARLTIEVMKRAAEKGAEIINYTKSEHFTYDKNQQVNGVKVIDKLTNENYTIKAK
NCTC8325 EYRTDDARLTIEVMKRAAEKGAEIINYTKSEHFTYDKNQQVNGVKVIDKLTNENYTIKAK
Newman EYRTDDARLTIEVMKRAAEKGAEIINYTKSEHFTYDKNQQVNGVKVIDKLTNENYTIKAK
USA300_FPR3757 EYRTDDARLTIEVMKRAAEKGAEIINYTKSEHFTYDKNQQVNGVKVIDKLTNENYTIKAK
************************************************************
COL KVVNAAGPWVDDVRSGDYARNNKKLRLTKGVHVVIDQSKFPLGQAVYFDTEKDGRMIFAI
N315 KVVNAAGPWVDDVRSGDYARNNKKLRLTKGVHVVIDQSKFPLGQAVYFDTEKDGRMIFAI
NCTC8325 KVVNAAGPWVDDVRSGDYARNNKKLRLTKGVHVVIDQSKFPLGQAVYFDTEKDGRMIFAI
Newman KVVNAAGPWVDDVRSGDYARNNKKLRLTKGVHVVIDQSKFPLGQAVYFDTEKDGRMIFAI
USA300_FPR3757 KVVNAAGPWVDDVRSGDYARNNKKLRLTKGVHVVIDQSKFPLGQAVYFDTEKDGRMIFAI
************************************************************
COL PREGKAYVGTTDTFYDNIKSSPLTTQEDRDYLIDAINYMFPSVNVTDEDIESTWAGIRPL
N315 PREGKAYVGTTDTFYDNIKSSPLTTQEDRDYLIDAINYMFPSVNVTDEDIESTWAGIRPL
NCTC8325 PREGKAYVGTTDTFYDNIKSSPLTTQEDRDYLIDAINYMFPSVNVTDEDIESTWAGIRPL
Newman PREGKVYVGTTDTFYDNIKSSPLTTQEDRDYLIDAINYMFPSVNVTDEDIESTWAGIRPL
USA300_FPR3757 PREGKAYVGTTDTFYDNIKSSPLTTQEDRDYLIDAINYMFPSVNVTDEDIESTWAGIRPL
*****.******************************************************
COL IYEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMAQDIVDLVSKRLKKDYGLTFSP
N315 IYEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMAQDIVDLVSKRLKKDYGLTFSP
NCTC8325 IYEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMAQDIVDLVSKRLKKDYGLTFSP
Newman IYEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMAQDIVDLVSKRLKKDYGLTFSP
USA300_FPR3757 IYEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMAQDIVDLVSKRLKKDYGLTFSP
************************************************************
COL CNTKGLAISGGDVGGSKNFDAFVEQKVDVAKGFGIDEDVARRLASKYGSNVDELFNIAQT
N315 CNTKGLAISGGDVGGSKNFDAFVEQKVDVAKGFGIDEDVARRLASKYGSNVDELFNIAQT
NCTC8325 CNTKGLAISGGDVGGSKNFDAFVEQKVDVAKGFGIDEDVARRLASKYGSNVDELFNIAQT
Newman CNTKGLAISGGDVGGSKNFDAFVEQKVDVAKGFGIDEDVARRLASKYGSNVDELFNIAQT
USA300_FPR3757 CNTKGLAISGGDVGGSKNFDAFVEQKVDVAKGFGIDEDVARRLASKYGSNVDELFNIAQT
************************************************************
COL SQYHDSKLPLEIYVELVYSIQQEMVYKPNDFLVRRSGKMYFNIKDVLDYKDAVIDIMADM
N315 SQYHDSKLPLEIYVELVYSIQQEMVYKPNDFLVRRSGKMYFNIKDVLDYKDAVIDIMADM
NCTC8325 SQYHDSKLPLEIYVELVYSIQQEMVYKPNDFLVRRSGKMYFNIKDVLDYKDAVIDIMADM
Newman SQYHDSKLPLEIYVELVYSIQQEMVYKPNDFLVRRSGKMYFNIKDVLDYKDAVIDIMADM
USA300_FPR3757 SQYHDSKLPLEIYVELVYSIQQEMVYKPNDFLVRRSGKMYFNIKDVLDYKDAVIDIMADM
************************************************************
COL LDYSPAQIEAYTEEVEQAIKEAQHGNNQPAVKE
N315 LDYSPAQIEAYTEEVEQAIKEAQHGNNQPAVKE
NCTC8325 LDYSPAQIEAYTEEVEQAIKEAQHGNNQPAVKE
Newman LDYSPAQIEAYTEEVEQAIKEAQHGNNQPAVKE
USA300_FPR3757 LDYSPAQIEAYTEEVEQAIKEAQHGNNQPAVKE
*********************************