PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003787000
• symbol^?: nikB
• synonym: opp2B
• description^?: peptide ABC transporter permease

  descriptions from strain specific annotations:

  • peptide ABC transporter permease
  • oligopeptide transporter permease
  • ABC transporter permease
  • oligopeptide ABC transporter membrane permease, putative
  • oligopeptide permease, channel-forming protein
  • ABC-type dipeptide/oligopeptide/nickel transport system, permease component
  • binding--dependent transport system inner membrane component family protein
  • binding-protein-dependent transport system inner membrane component family protein
  • binding-protein-dependent transport system inner membrane protein
  • dipeptide/oligopeptide/nickel ABC transporter permease
  • nickel transport system permease protein
  • oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein
  • oligopeptide ABC transporter membrane protein
  • oligopeptide ABC transporter permease
  • oligopeptide membrane permease
  • oligopeptide transporter membrane permease domain
  • putative oligopeptide transport system permease
  • Putative oligopeptide transport system permease protein oppB2
• strand^?: -
• coordinates^?: 4081615..4082750
• synteny block^?: BlockID0028440
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1417
N315:
SA1214 (opp-2B)
NCTC8325:
SAOUHSC_01380
Newman:
NWMN_1293
USA300_FPR3757:
SAUSA300_1276 (opp-2B)
04-02981:
SA2981_1336 (opp-2B)
08BA02176:
C248_1419
11819-97:
MS7_1339
6850:
RSAU_001262 (oppB3)
71193:
ST398NM01_1382
ECT-R 2:
ECTR2_1239
ED133:
SAOV_1391c
ED98:
SAAV_1364
HO 5096 0412:
SAEMRSA15_12460
JH1:
SaurJH1_1472
JH9:
SaurJH9_1443
JKD6008:
SAA6008_01346 (opp-2B)
JKD6159:
SAA6159_01249 (opp-2B)
LGA251:
SARLGA251_12990
M013:
M013TW_1327
MRSA252:
SAR1395
MSHR1132:
SAMSHR1132_12240
MSSA476:
SAS1323
Mu3:
SAHV_1370
Mu50:
SAV1382
MW2:
MW1270 (opp-2B)
RF122:
SAB1237c
ST398:
SAPIG1382
T0131:
SAT0131_01453
TCH60:
HMPREF0772_11826
TW20:
SATW20_13810
USA300_TCH1516:
USA300HOU_1316
VC40:
SAVC_06155

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
  N315            MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
  NCTC8325        MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
  Newman          MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
  USA300_FPR3757  MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKL
                  ************************************************************
  
  COL             GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
  N315            GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
  NCTC8325        GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
  Newman          GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
  USA300_FPR3757  GLNDSLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIP
                  ************************************************************
  
  COL             LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
  N315            LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
  NCTC8325        LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
  Newman          LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
  USA300_FPR3757  LGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIVTNLMNIDSVILSQFILPVIT
                  ************************************************************
  
  COL             LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
  N315            LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
  NCTC8325        LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
  Newman          LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
  USA300_FPR3757  LSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
                  ************************************************************
  
  COL             GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
  N315            GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
  NCTC8325        GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
  Newman          GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
  USA300_FPR3757  GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLL
                  ************************************************************
  
  COL             DPKQRLQLGNPKIKTNTPLISESSDRHA
  N315            DPKQRLQLGNPKNKTNTPLISESSDRHA
  NCTC8325        DPKQRLQLGNPKIKTNTPLISESSDRHA
  Newman          DPKQRLQLGNPKIKTNTPLISESSDRHA
  USA300_FPR3757  DPKQRLQLGNPKIKTNTPLISESSDRHA
                  ************ ***************