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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003912000
- symbol?: nth
- synonym:
- description?: endonuclease III
- endonuclease III
- endonuclease III, putative
- endonuclease-like protein
- DNA-(apurinic or apyrimidinic site) lyase
- Endonuclease III / DNA-(Apurinic or apyrimidinic site) lyase
- endonuclease III-like protein
- putative endonuclease
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4230666..4231325
- synteny block?: BlockID0029580
- occurrence?: in 100% of 34 strains
nth : base excision repair system endonuclease III [1]
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1408 (nth)
08BA02176:
C248_1492
11819-97:
MS7_1408 (nth)
6850:
RSAU_001324 (nth)
71193:
ST398NM01_1452
ECT-R 2:
ECTR2_1306 (nth)
ED133:
SAOV_1460
ED98:
SAAV_1439 (nth)
HO 5096 0412:
SAEMRSA15_13130
JH1:
SaurJH1_1540
JH9:
SaurJH9_1511
JKD6008:
SAA6008_01421 (nth)
JKD6159:
SAA6159_01317 (nth)
JSNZ:
JSNZ_001437 (nth)
LGA251:
SARLGA251_13660
M013:
M013TW_1400
MRSA252:
SAR1463
MSHR1132:
SAMSHR1132_12920
MSSA476:
SAS1395
Mu3:
SAHV_1440 (nth)
Mu50:
SAV1452 (nth)
MW2:
MW1342 (nth)
RF122:
SAB1316c
ST398:
SAPIG1452 (nth)
T0131:
SAT0131_01541
TCH60:
HMPREF0772_11752 (nth)
TW20:
SATW20_14510
USA300_TCH1516:
USA300HOU_1390 (nth)
VC40:
SAVC_06515
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MVSKKKALEMIDVIANMFPDAECELKHDNPFELTIAVLLSAQCTDVLVNRVTTELFKKYK
N315 MVSKKKALEMIDVIANMFPDAECELKHDNPFELTIAVLLSAQCTDVLVNRVTTELFKKYK
NCTC8325 MVSKKKALEMIDVIANMFPDAECELKHDNPFELTIAVLLSAQCTDVLVNRVTTELFKKYK
Newman MVSKKKALEMIDVIANMFPDAECELKHDNPFELTIAVLLSAQCTDVLVNRVTTELFKKYK
USA300_FPR3757 MVSKKKALEMIDVIANMFPDAECELKHDNPFELTIAVLLSAQCTDVLVNRVTTELFKKYK
************************************************************
COL TPEDYLAVSDEELMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEIPQTHKELESLAGVGR
N315 TPEDYLAVSDEELMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEIPQTHKELESLAGVGR
NCTC8325 TPEDYLAVSDEELMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEIPQTHKELESLAGVGR
Newman TPEDYLAVSDEELMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEIPQTHKELESLAGVGR
USA300_FPR3757 TPEDYLAVSDEELMNDIRSIGLYRNKAKNIKKLCQSLIDQFNGEIPQTHKELESLAGVGR
************************************************************
COL KTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIPRDRWNRSHHQ
N315 KTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIPRDRWNRSHHQ
NCTC8325 KTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIPRDRWNRSHHQ
Newman KTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIPRDRWNRSHHQ
USA300_FPR3757 KTANVVMSVAFDEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCSVIPRDRWNRSHHQ
************************************************************
COL LIFFGRYHCLARKPKCDICPLLEDCREGQKRYKASLKEA
N315 LIFFGRYHCLARKPKCDICPLLEDCREGQKRYKASLKEA
NCTC8325 LIFFGRYHCLARKPKCDICPLLEDCREGQKRYKASLKEA
Newman LIFFGRYHCLARKPKCDICPLLEDCREGQKRYKASLKEA
USA300_FPR3757 LIFFGRYHCLARKPKCDICPLLEDCREGQKRYKASLKEA
***************************************
- ↑ B Demple, A Johnson, D Fung
Exonuclease III and endonuclease IV remove 3' blocks from DNA synthesis primers in H2O2-damaged Escherichia coli.
Proc Natl Acad Sci U S A: 1986, 83(20);7731-5
[PubMed:2429316] [WorldCat.org] [DOI] (P p)Kelly E Hurley, Srijon K Banerjee, Amelia C Stephens, Michelle R Scribner, Vaughn S Cooper, Anthony R Richardson
The contribution of DNA repair pathways to Staphylococcus aureus fitness and fidelity during nitric oxide stress.
mBio: 2023, 14(6);e0215623
[PubMed:37948342] [WorldCat.org] [DOI] (I p)