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⊟Summary[edit | edit source]
- pan ID?: SAUPAN003913000
- symbol?: dnaD
- synonym:
- description?: chromosome replication protein DnaD
- chromosome replication protein DnaD
- DNA replication protein DnaD
- DnaD domain-containing protein
- primosomal protein DnaD, putative
- putative DNA replication protein DnaD
- Chromosome replication initiation protein dnaD
- DNA-binding protein
- dnaD and phage-associated domain protein
- dnaD domain protein
- DNA replication initiation protein
- DNA replication protein, DnaD
- DNA replication protein DnaD, putative
- primosomal protein DnaD
- primosome subunit DnaD
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4231315..4232001
- synteny block?: BlockID0029590
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1409 (dnaD)
08BA02176:
C248_1493
11819-97:
MS7_1409
6850:
RSAU_001325 (dnaD)
71193:
ST398NM01_1453
ECT-R 2:
ECTR2_1307
ED133:
SAOV_1461
ED98:
SAAV_1440
HO 5096 0412:
SAEMRSA15_13140
JH1:
SaurJH1_1541
JH9:
SaurJH9_1512
JKD6008:
SAA6008_01422 (dnaD)
JKD6159:
SAA6159_01318 (dnaD)
LGA251:
SARLGA251_13670
M013:
M013TW_1401
MRSA252:
SAR1464
MSHR1132:
SAMSHR1132_12930
MSSA476:
SAS1396
Mu3:
SAHV_1441
Mu50:
SAV1453
MW2:
MW1343
RF122:
SAB1317c
ST398:
SAPIG1453
T0131:
SAT0131_01542
TCH60:
HMPREF0772_11751 (dnaD)
TW20:
SATW20_14520
USA300_TCH1516:
USA300HOU_1391 (dnaD1)
VC40:
SAVC_06520
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDKYQLKARPVVIRRELLDHYSDLGLDEQDLVILLKLIYASETSNKQPSIELLQKGSTMQ
N315 MDKYQLKARPVVIRRELLDHYSDLGLDEQDLVILLKLIYASETSNKQPSIELLQKGSTMQ
NCTC8325 MDKYQLKARPVVIRRELLDHYSDLGLDEQDLVILLKLIYASETSNKQPSIELLQKGSTMQ
Newman MDKYQLKARPVVIRRELLDHYSDLGLDEQDLVILLKLIYASETSNKQPSIELLQKGSTMQ
USA300_FPR3757 MDKYQLKARPVVIRRELLDHYSDLGLDEQDLVILLKLIYASETSNKQPSIELLQKGSTMQ
************************************************************
COL PRDITMVIQNLIQRELLELQVQKDEEGRFTEYMNLDPFFEKLSHILKQQSMETKELNSKE
N315 PRDITMVIQNLIQRELLELQVQKDEEGRFTEYMNLDPFFEKLSHILKQQSMETKEQNSKE
NCTC8325 PRDITMVIQNLIQRELLELQVQKDEEGRFTEYMNLDPFFEKLSHILKQQSMETKELNSKE
Newman PRDITMVIQNLIQRELLELQVQKDEEGRFTEYMNLDPFFEKLSHILKQQSMETKELNSKE
USA300_FPR3757 PRDITMVIQNLIQRELLELQVQKDEEGRFTEYMNLDPFFEKLSHILKQQSMETKELNSKE
******************************************************* ****
COL KFKQLFRVLEDTFARPLSPYEIETLNQWIDVDKHDTAIIQAALDEANSLNKLSFKYIDRI
N315 KFKQLFRVLEDTFARPLSPYEIETLNQWIDVDKHDSAIIQAALDEANSLNKLSFKYMDRI
NCTC8325 KFKQLFRVLEDTFARPLSPYEIETLNQWIDVDKHDTAIIQAALDEANSLNKLSFKYIDRI
Newman KFKQLFRVLEDTFARPLSPYEIETLNQWIDVDKHDTAIIQAALDEANSLNKLSFKYIDRI
USA300_FPR3757 KFKQLFRVLEDTFARPLSPYEIETLNQWIDVDKHDTAIIQAALDEANSLNKLSFKYIDRI
***********************************:********************:***
COL LLNWKKNNVKTIDDSRKIREKFNKPKMTHTVKTVPKFDWLNGENLDGK
N315 LLNWKKNNVKTIDDSRKIREKFNKPKMTHTVKTVPKFDWLNGENLDGK
NCTC8325 LLNWKKNNVKTIDDSRKIREKFNKPKMTHTVKTVPKFDWLNGENLDGK
Newman LLNWKKNNVKTIDDSRKIREKFNKPKMTHTVKTVPKFDWLNGENLDGK
USA300_FPR3757 LLNWKKNNVKTIDDSRKIREKFNKPKMTHTVKTVPKFDWLNGENLDGK
************************************************