PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN003953000
• symbol^?: —
• synonym:
• description^?: putative lipoprotein

  descriptions from strain specific annotations:

  • putative lipoprotein
  • Lipoprotein
  • pseudogene
• strand^?: -
• coordinates^?: 4267069..4271305
• synteny block^?: BlockID0029990
• occurrence^?: in 36% of 33 strains

⊟Orthologs

COL:
SACOL1528
N315:
—
NCTC8325:
SAOUHSC_01508
Newman:
NWMN_1394
USA300_FPR3757:
SAUSA300_1376
04-02981:
—
08BA02176:
—
11819-97:
MS7_1439
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_1492c
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
SAA6008_01455
JKD6159:
—
LGA251:
SARLGA251_13980
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_01577 (lpl3)
TCH60:
—
TW20:
SATW20_14830
USA300_TCH1516:
USA300HOU_1425
VC40:
SAVC_06675

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MLKKAKFILMATILLSGCSTTNNESNKETKSVPEEMDASKYVGQGFQPPAEKDAIEFAKK
  NCTC8325        MLKKAKFILMATILLSGCSTTNNESNKETKSVPEEMDASKYVGQGFQPPAEKDAIEFAKK
  Newman          MLKKAKFILMATILLSGCSTTNNESNKETKSVPEEMDASKYVGQGFQPPAEKDAIEFAKK
  USA300_FPR3757  MLKKAKFILMATILLSGCSTTNNESNKETKSVPEEMDASKYVGQGFQPPAEKDAIEFAKK
                  ************************************************************
  
  COL             HKDKIAKRGEQFFMDNFGLKVKATNVIGSGDGVEVFVHCDDHDIVFNASIPFDKSIIDSD
  NCTC8325        HKDKIAKRGEQFFMDNFGLKVKATNVIGSGDGVEVFVHCDDHDIVFNASIPFDKSIIDSD
  Newman          HKDKIAKRGEQFFMDNFGLKVKATNVIGSGDGVEVFVHCDDHDIVFNASIPFDKSIIDSD
  USA300_FPR3757  HKDKIAKRGEQFFMDNFGLKVKATNVIGSGDGVEVFVHCDDHDIVFNASIPFDKSIIDSD
                  ************************************************************
  
  COL             SSLRSKDKGDDMSTLVGAVLSGFEYRAQKEKYDKLYKFFKDNEEKYQYTGFTKEAINKTQ
  NCTC8325        SSLRSKDKGDDMSTLVGAVLSGFEYRAQKEKYDKLYKFFKDNEEKYQYTGFTKEAINKTQ
  Newman          SSLRSKDKGDDMSTLVGAVLSGFEYRAQKEKYDKLYKFFKDNEEKYQYTGFTKEAINKTQ
  USA300_FPR3757  SSLRSKDKGDDMSTLVGAVLSGFEYRAQKEKYDKLYKFFKDNEEKYQYTGFTKEAINKTQ
                  ************************************************************
  
  COL             NSGYENEYFYISAIPYNLAEYRDYFEPLLNKSDSEFSKELSNVKKQLKDKSKVSVTTTLF
  NCTC8325        NSGYENEYFYISAIPYNLAEYRDYFEPLLNKSDSEFSKELSNVKKQLKDKSKVSVTTTLF
  Newman          NSGYENEYFYISAIPYNLAEYRDYFEPLLNKSDSEFSKELSNVKKQLKDKSKVSVTTTLF
  USA300_FPR3757  NSGYENEYFYISAIPYNLAEYRDYFEPLLNKSDSEFSKELSNVKKQLKDKSKVSVTTTLF
                  ************************************************************
  
  COL             SKKKNYTKKSNSENVIKMAEEIKKDKEIPNGIELSIKFSDNKINTVKPNFNGESTSEYGV
  NCTC8325        SKKKNYTKKSNSENVIKMAEEIKKDKEIPNGIELSIKFSDNKINTVKPNFNGESTSEYGV
  Newman          SKKKNYTKKSNSENVIKMAEEIKKDKEIPNGIELSIKFSDNKINTVKPNFNGESTSEYGV
  USA300_FPR3757  SKKKNYTKKSNSENVIKMAEEIKKDKEIPNGIELSIKFSDNKINTVKPNFNGESTSEYGV
                  ************************************************************
  
  COL             FDQE
  NCTC8325        FDQE
  Newman          FDQE
  USA300_FPR3757  FDQE
                  ****