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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004027000
- symbol?: scpB
- synonym:
- description?: SMC-Scp complex subunit ScpB
- SMC-Scp complex subunit ScpB
- segregation and condensation protein B
- pseudogene
- Putative transcriptional regulators (Ypuh-like)
- transcriptional regulator
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4318025..4318567
- synteny block?: BlockID0030640
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1451
08BA02176:
C248_1534
11819-97:
MS7_1511 (scpB)
6850:
RSAU_001362 (scpB)
71193:
ST398NM01_1560
ECT-R 2:
ECTR2_1345 (scpB)
ED133:
SAOV_1496
ED98:
SAAV_1484 (scpB)
HO 5096 0412:
SAEMRSA15_14160
JH1:
SaurJH1_1582
JH9:
SaurJH9_1551
JKD6008:
SAA6008_01464 (scpB)
JKD6159:
SAA6159_01423 (scpB)
LGA251:
SARLGA251_14020
M013:
M013TW_1508
MRSA252:
SAR1570
MSHR1132:
SAMSHR1132_13330
MSSA476:
SAS1434
Mu3:
SAHV_1482
Mu50:
SAV1494
MW2:
MW1448
RF122:
SAB1355c
ST398:
SAPIG1560 (scpB)
T0131:
SAT0131_01587 (cobW)
TCH60:
HMPREF0772_11647 (scpB)
TW20:
SATW20_14920
USA300_TCH1516:
—
VC40:
SAVC_06720
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGMTYVLTT
N315 MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGTTYVLTT
NCTC8325 MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGMTYVLTT
Newman MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGMTYVLTT
USA300_FPR3757 MDNHGILESLLFTAGDEGLDEKQLLEILDMSKDQLVELIENYSSHGLMIQRFGMTYVLTT
***************************************************** ******
COL KKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAK
N315 KKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAK
NCTC8325 KKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAK
Newman KKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAK
USA300_FPR3757 KKEAATYIEQLIEQKSQMKLSQAAMEVLSIIAYNQPLSRSDIELIRSINSDGAVKTLIAK
************************************************************
COL GLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEEDDEEMDAFFSNLVNQKGENND
N315 GLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEEDDEEMDAFFSNLVNQKGENND
NCTC8325 GLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEEDDEEMDAFFSNLVNQKGENND
Newman GLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEEDDEEMDAFFSNLVNQKGENND
USA300_FPR3757 GLVEAKVVNEQRSQQLITTDLFLNVFGISNIEDLPTTEEDDEEMDAFFSNLVNQKGENND
************************************************************