Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004037000
- symbol?: rnz
- synonym:
- description?: ribonuclease Z
- ribonuclease Z
- AtsA/ElaC family protein
- metallo-beta-lactamase, putative
- metallo-beta-lactamase
- metallo-beta-lactamase, AtsA/ElaC family
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4325409..4326329
- synteny block?: BlockID0030740
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1461
08BA02176:
C248_1544
11819-97:
MS7_1521 (rnz)
6850:
RSAU_001371
71193:
ST398NM01_1570
ECT-R 2:
ECTR2_1355 (rnz)
ED133:
SAOV_1506
ED98:
SAAV_1494
HO 5096 0412:
SAEMRSA15_14260
JH1:
SaurJH1_1592
JH9:
SaurJH9_1561
JKD6008:
SAA6008_01473
JKD6159:
SAA6159_01433
LGA251:
SARLGA251_14120
M013:
M013TW_1518
MRSA252:
SAR1581
MSHR1132:
SAMSHR1132_13430
MSSA476:
SAS1444
Mu3:
SAHV_1492
Mu50:
SAV1504
MW2:
MW1458
RF122:
SAB1365c
ST398:
SAPIG1570 (rnz)
T0131:
SAT0131_01597
TCH60:
HMPREF0772_11637 (rnz)
TW20:
SATW20_15020
USA300_TCH1516:
USA300HOU_1505
VC40:
SAVC_06770
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIF
N315 MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIF
NCTC8325 MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIF
Newman MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIF
USA300_FPR3757 MEVTFFGTSAGLPTKERNTQAIALNLEPYSNSIWLFDVGEGTQHQILHHAIKLGKVTHIF
************************************************************
COL ITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIE
N315 ITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIE
NCTC8325 ITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIE
Newman ITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIE
USA300_FPR3757 ITHMHGDHIFGLPGLLSSRSFQGGEQKPLTLVGPKGIKAYVEMSMNLSESHLNYPITYIE
************************************************************
COL IDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKS
N315 IDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKS
NCTC8325 IDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKS
Newman IDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKS
USA300_FPR3757 IDDHLTYHHDGFTVEAHLLNHGIPSYGYRVMAPETTGTINVEALKNIGLEPGPKYQEVKS
************************************************************
COL HDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKH
N315 HDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKH
NCTC8325 HDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKH
Newman HDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKH
USA300_FPR3757 HDTFEHNGQVYQSKDFRGESKQGPVVAIFGDTKPCSNERVISRDADVMVHEATYIDGEKH
************************************************************
COL LANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQTLIQNEDTPNFNFVKD
N315 LANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQILIQNEDTPNFNFVKD
NCTC8325 LANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQTLIQNEDTPNFNFVKD
Newman LANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQTLIQNEDTPNFNFVKD
USA300_FPR3757 LANNYHHSHIEDVFALIKEANVKRTLITHLSNRYNTEDINEIYQTLIQNEDTPNFNFVKD
******************************************** ***************
COL FDSFKI
N315 FDSFKV
NCTC8325 FDSFKI
Newman FDSFKI
USA300_FPR3757 FDSFKI
*****: