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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

Summary[edit | edit source]

  • pan ID?: SAUPAN004095000
  • symbol?:
  • synonym:
  • description?: cell division protein FtsK

      descriptions from strain specific annotations:

    • cell division protein FtsK
    • FtsK/SpoIIIE family protein
    • FtsK/SpoIIIE family cell division protein
  • strand?: -
  • coordinates?: 4372902..4374588
  • synteny block?: BlockID0031250
  • occurrence?: in 26% of 34 strains

virD4 : ICE6013 coupling protein ATPase VirD4 [1]

Some staphylococci have acquired a Type IV secretion system encoded on an integrative conjugative element (ICE6013), which encodes a minimal conjugative transfer function that may have adapted to double as a small molecule translocation system. Coupling protein ATPases are cytoplasmic proteins that identify cargo to be translocated and guide it to the relaxasome complex via their interaction with VirB4 ATPases. The cargo can then be directly transferred through the translocase channel or attached to Relaxase for facilitated transport through the translocase channel.

Orthologs[edit | edit source]

    COL:
    N315:
    NCTC8325:
    Newman:
    USA300_FPR3757:
    04-02981:
    08BA02176:
    11819-97:
    6850:
    71193:
    ECT-R 2:
    ED133:
    ED98:
    HO 5096 0412:
    SAEMRSA15_12350
    JH1:
    JH9:
    JKD6008:
    SAA6008_02635
    JKD6159:
    JSNZ:
    LGA251:
    M013:
    MRSA252:
    SAR1292
    MSHR1132:
    SAMSHR1132_15350
    MSSA476:
    Mu3:
    Mu50:
    MW2:
    RF122:
    ST398:
    T0131:
    SAT0131_02810 (thrB)
    TCH60:
    TW20:
    SATW20_27170
    USA300_TCH1516:
    USA300HOU_0630
    VC40:

Genome Viewer[edit | edit source]

COL
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MAMNEIALFKGVRIQPYQKYIDFMFASVLAFIFLVYRIYILFIDYKSVNKKLDILTLFAY
    USA300_FPR3757  MAMNEIALFKGVRIQPYQKYIDFMFASVLAFIFLVYRIYILFIDYKSVNKKLDILTLFAY
                    ************************************************************

    COL             FKPHLLYLLIGTAIIFVICKLIAQLLIRFKTKDLAEMIETQGFHNRTVIKKTTEYIPIDY
    USA300_FPR3757  FKPHLLYLLIGTAIIFVICKLIAQFLIRFKTKDLAEMIETQGFHNRTVIKKTTEYIPIDY
                    ************************:***********************************

    COL             KQTEYDYYPTMFYKRGKKTFVIHIKKDGSRFQDNYLELETIIEPMFNSELVEKKHIGRYL
    USA300_FPR3757  KQTEYDYYPTMFYKRGKKSFVIHIKKDGSRFQDNYLELETIIEPMFNSELVEKKHIGRYL
                    ******************:*****************************************

    COL             RYEFMPLKYKKRIVMNGEQESNTIFYDTKIAITHQITWDFVKAPHGLVTGITGGGKTYFL
    USA300_FPR3757  RYEFMPLKYKKRIVMNGEQESNTIFYDTKIAITHQITWDFVKAPHGLVTGITGGGKTYFL
                    ************************************************************

    COL             FYVIRELFRRHSEVRLLDPKVSDLSFMKRVIGDDKVADTKGQILKQLREANNEMEERFRL
    USA300_FPR3757  FYVIRELFRRHSEVRLLDPKVSDLSFMKRVIGDDKVADTKGQILKQLREANNEMEERFRL
                    ************************************************************

    COL             MNDSSDYKIGNDFRNFDMRPYFIIFDEVTAFTSTLDKKELQEMNDYLINIIMKGRQAGVF
    USA300_FPR3757  MNDSSDYKIGNDFRNFDMRPYFIIFDEVTAFTSTLDKKELQEMNDYLINIIMKGRQAGVF
                    ************************************************************

    COL             MFLTAQRPDADVIKGNVRDQLGLRVSLGNLSNDGYRMTFGQTDKEFQTIHDSDIGRGYIT
    USA300_FPR3757  MFLTAQRPDADVIKGNVRDQLGLRVSLGNLSNDGYRMTFGQTDKEFQTIHDSDIGRGYIS
                    ***********************************************************:

    COL             ILGQYNEPILFDAPLMEQYDFVEDVKQILNKE
    USA300_FPR3757  ILGQYNEPILFDAPLMEQYDFVEDVKQILNKE
                    ********************************

  1. Zita Nagy, Mónika Szabó, Michael Chandler, Ferenc Olasz
    Analysis of the N-terminal DNA binding domain of the IS30 transposase.
    Mol Microbiol: 2004, 54(2);478-88
    [PubMed:15469518] [WorldCat.org] [DOI] (P p)
    Davida S Smyth, D Ashley Robinson
    Integrative and sequence characteristics of a novel genetic element, ICE6013, in Staphylococcus aureus.
    J Bacteriol: 2009, 191(19);5964-75
    [PubMed:19648240] [WorldCat.org] [DOI] (I p)
    Minny Bhatty, Jenny A Laverde Gomez, Peter J Christie
    The expanding bacterial type IV secretion lexicon.
    Res Microbiol: 2013, 164(6);620-39
    [PubMed:23542405] [WorldCat.org] [DOI] (I p)
    Emily A Sansevere, Xiao Luo, Joo Youn Park, Sunghyun Yoon, Keun Seok Seo, D Ashley Robinson
    Transposase-Mediated Excision, Conjugative Transfer, and Diversity of ICE6013 Elements in Staphylococcus aureus.
    J Bacteriol: 2017, 199(8);
    [PubMed:28138100] [WorldCat.org] [DOI] (I e)