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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1578 [new locus tag: SACOL_RS08040 ]
- pan locus tag?: SAUPAN004095000
- symbol: SACOL1578
- pan gene symbol?: —
- synonym:
- product: FtsK/SpoIIIE family protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1578 [new locus tag: SACOL_RS08040 ]
- symbol: SACOL1578
- product: FtsK/SpoIIIE family protein
- replicon: chromosome
- strand: -
- coordinates: 1613132..1614490
- length: 1359
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3237610 NCBI
- RefSeq: YP_186418 NCBI
- BioCyc: see SACOL_RS08040
- MicrobesOnline: 913027 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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1321ATGGCAATGAATGAAATTGCTTTATTTAAAGGCGTACGTATACAGCCTTATCAGAAGTAT
ATTGATTTTATGTTTGCAAGTGTATTAGCATTTATTTTTTTGGTATATCGTATATACATT
TTGTTTATTGATTATAAATCAGTTAATAAAAAATTGGATATATTGACGTTGTTTGCATAT
TTTAAACCGCATTTATTGTATTTATTAATTGGTACAGCAATTATATTTGTTATATGTAAG
CTTATCGCTCAGCTTTTAATTCGTTTTAAAACAAAAGATTTAGCTGAAATGATTGAAACA
CAAGGCTTTCATAATCGTACAGTAATCAAGAAAACAACCGAGTATATCCCTATTGATTAT
AAACAAACTGAATATGACTATTATCCAACGATGTTTTATAAACGTGGTAAAAAAACTTTT
GTTATTCATATTAAAAAAGACGGTTCGAGGTTTCAAGATAATTATTTAGAGTTAGAAACG
ATTATTGAACCAATGTTTAATTCTGAATTAGTAGAAAAAAAGCATATTGGTCGTTATTTG
AGATATGAATTTATGCCACTTAAATATAAAAAGCGTATTGTTATGAATGGCGAACAAGAA
TCAAATACAATTTTTTATGATACAAAAATTGCTATTACGCATCAAATTACTTGGGATTTT
GTGAAAGCACCTCATGGATTGGTTACAGGTATAACCGGAGGTGGTAAAACATATTTTTTA
TTTTATGTGATTCGTGAGTTATTCCGTAGACATTCAGAAGTACGTTTATTAGACCCAAAA
GTTTCAGATTTAAGCTTTATGAAGCGCGTTATTGGTGATGATAAAGTTGCAGATACTAAA
GGTCAAATATTAAAACAATTGAGAGAAGCTAATAATGAAATGGAAGAGCGTTTTAGATTA
ATGAATGATAGTTCGGATTATAAAATCGGAAATGATTTCCGTAATTTTGATATGCGCCCC
TATTTCATTATTTTTGATGAGGTAACGGCTTTTACTTCAACTTTAGATAAAAAAGAATTA
CAAGAAATGAATGATTATTTAATTAATATTATTATGAAAGGTCGTCAAGCTGGTGTATTT
ATGTTTTTAACAGCACAAAGACCAGATGCAGATGTGATTAAAGGTAATGTGCGTGACCAA
TTAGGGTTACGTGTGTCTTTAGGTAATTTGTCAAATGATGGTTATCGTATGACCTTTGGT
CAAACTGATAAAGAATTTCAAACGATTCATGATAGTGATATCGGCCGAGGTTATATAACT
ATACTTGGACAATATAATGAACCAATTTTATTTGATGCACCTTTAATGGAACAATATGAT
TTTGTGGAAGATGTGAAACAAATATTAAATAAGGAGTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1578 [new locus tag: SACOL_RS08040 ]
- symbol: SACOL1578
- description: FtsK/SpoIIIE family protein
- length: 452
- theoretical pI: 8.99433
- theoretical MW: 53351.6
- GRAVY: -0.233628
⊟Function[edit | edit source]
- TIGRFAM: Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCa (TIGR03924; HMM-score: 31.2)Protein fate Protein and peptide secretion and trafficking type VII secretion protein EssC (TIGR03928; HMM-score: 27.5)Protein fate Protein and peptide secretion and trafficking type VII secretion protein EccCb (TIGR03925; HMM-score: 27.2)and 3 moreMobile and extrachromosomal element functions Other conjugative coupling factor TraD, SXT/TOL subfamily (TIGR03743; HMM-score: 20.6)Cellular processes Pathogenesis type II secretion system protein E (TIGR02533; HMM-score: 11.9)Protein fate Protein and peptide secretion and trafficking type II secretion system protein E (TIGR02533; HMM-score: 11.9)
- TheSEED :
- FIG01108595: hypothetical protein
- PFAM: P-loop_NTPase (CL0023) FtsK_SpoIIIE; FtsK/SpoIIIE family (PF01580; HMM-score: 37.9)and 8 moreAAA_10; AAA-like domain (PF12846; HMM-score: 16.9)DUF87; Domain of unknown function DUF87 (PF01935; HMM-score: 15.9)ResIII; Type III restriction enzyme, res subunit (PF04851; HMM-score: 15.2)AAA; ATPase family associated with various cellular activities (AAA) (PF00004; HMM-score: 15.1)AAA_14; AAA domain (PF13173; HMM-score: 14.5)DUF853; Bacterial protein of unknown function (DUF853) (PF05872; HMM-score: 14)T2SSE; Type II/IV secretion system protein (PF00437; HMM-score: 13.4)no clan defined DHHC; DHHC palmitoyltransferase (PF01529; HMM-score: 8.7)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Cytoplasmic Membrane
- Cytoplasmic Score: 1.05
- Cytoplasmic Membrane Score: 8.78
- Cellwall Score: 0.08
- Extracellular Score: 0.09
- Internal Helices: 2
- LocateP: Multi-transmembrane
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -1
- N-terminally Anchored Score: -1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.000259
- TAT(Tat/SPI): 0.000081
- LIPO(Sec/SPII): 0.001031
- predicted transmembrane helices (TMHMM): 2
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MAMNEIALFKGVRIQPYQKYIDFMFASVLAFIFLVYRIYILFIDYKSVNKKLDILTLFAYFKPHLLYLLIGTAIIFVICKLIAQLLIRFKTKDLAEMIETQGFHNRTVIKKTTEYIPIDYKQTEYDYYPTMFYKRGKKTFVIHIKKDGSRFQDNYLELETIIEPMFNSELVEKKHIGRYLRYEFMPLKYKKRIVMNGEQESNTIFYDTKIAITHQITWDFVKAPHGLVTGITGGGKTYFLFYVIRELFRRHSEVRLLDPKVSDLSFMKRVIGDDKVADTKGQILKQLREANNEMEERFRLMNDSSDYKIGNDFRNFDMRPYFIIFDEVTAFTSTLDKKELQEMNDYLINIIMKGRQAGVFMFLTAQRPDADVIKGNVRDQLGLRVSLGNLSNDGYRMTFGQTDKEFQTIHDSDIGRGYITILGQYNEPILFDAPLMEQYDFVEDVKQILNKE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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