Jump to navigation
Jump to search
PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40
NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus COL
- locus tag: SACOL1576 [new locus tag: SACOL_RS08030 ]
- pan locus tag?: SAUPAN004093000
- symbol: SACOL1576
- pan gene symbol?: —
- synonym:
- product: traG protein
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SACOL1576 [new locus tag: SACOL_RS08030 ]
- symbol: SACOL1576
- product: traG protein
- replicon: chromosome
- strand: -
- coordinates: 1610244..1611290
- length: 1047
- essential: unknown
⊟Accession numbers[edit | edit source]
- Gene ID: 3237681 NCBI
- RefSeq: YP_186416 NCBI
- BioCyc: see SACOL_RS08030
- MicrobesOnline: 913025 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
- 1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021ATGGTAAATAAAAAAGATATTGCTAAAAAAGTAATAGGTAAAACGCCAATAGGTGTTAAA
TTGAAATTAGCGAAAGTCATCATCATTTTGTGTGTGGTGGCTTTTTTTACATTTCCAGTA
ATTGTAATGTTTTTGTTAGCGCCTGATTTAAATAAAGGTAAAGATGATGCTGGTTGTACT
GTTAGTGGCGGTAATGTTTCGGCAAATGGTATTGATAAGTTTAACGAAAATGCTAAAGGT
GGAAAATTAGAGGGTAAAGGAAAAGAAATACAGAAAATTGCAGAAAAAAATAAAGTACCT
GTGAATATTTTTATGGCCATTATTGCGAGTGAATCACAATGGGGTAAAGGAGAAAATGCG
ACAAGACAAAATAATCCTTTGTCTGTTATGGGTTCAAAATCGATTCATGATTCAACATAT
CCAACTATTGAAGATGGTCTTAATGCGGGAGCTAAAAATTTGTATGATGTTTATATTTCT
AAAGGTTTAGATACTCCTAAAAAAATAGGTCCCAAATATGCGCCTGTTGGTGCGTCAAAT
GACCCTAATAATATGAATGCCCGTTGGATACCAACAGTTGAAAAAATTATGAAAGATTTA
GGCGGTTCAGAAGCTAAAACGTCATGTAGTAATGGTAAAGGAAAGTCTATAAAGTTTAAT
GGTAAATTGCCACATTGGTCAAATGATGACCCTGGAAAAGGTAATTTATACACTGCTGGT
CAATGTACTTGGTATGCATACGGTATGCGTCAAAAAATGGGTAAACCTGTATCGACTTAT
TGGCATGATGCACATAAATGGAATGATAGAGCTAAAGCTGAGGGTTATAAAGTTGATAAA
AATCCGGAACCTGGTGCATTATTTATTGCTGAACAAGGTGCAGGCGGTCATGATGGGCAT
TATGGTCATGTGGCTGTTGTTATTGGTGTAAGTGATGGTGGTAAAACATTTAGAATAACA
GAAATGAATTGGGAAGGTGCTTTTAAAGTTAATGAACGTACATTGAAAATGACTGACGGA
TATAGTTTTATTCATGATAAGGAGTGA60
120
180
240
300
360
420
480
540
600
660
720
780
840
900
960
1020
1047
⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SACOL1576 [new locus tag: SACOL_RS08030 ]
- symbol: SACOL1576
- description: traG protein
- length: 348
- theoretical pI: 9.84457
- theoretical MW: 37798
- GRAVY: -0.486207
⊟Function[edit | edit source]
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: Extracellular
- Cytoplasmic Score: 0.01
- Cytoplasmic Membrane Score: 0.09
- Cellwall Score: 0.18
- Extracellular Score: 9.72
- Internal Helix: 1
- LocateP: N-terminally anchored (No CS)
- Prediction by SwissProt Classification: Membrane
- Pathway Prediction: Sec-(SPI)
- Intracellular possibility: 0.17
- Signal peptide possibility: -0.5
- N-terminally Anchored Score: 5
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.039687
- TAT(Tat/SPI): 0.001585
- LIPO(Sec/SPII): 0.00363
- predicted transmembrane helices (TMHMM): 1
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MVNKKDIAKKVIGKTPIGVKLKLAKVIIILCVVAFFTFPVIVMFLLAPDLNKGKDDAGCTVSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVNIFMAIIASESQWGKGENATRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYISKGLDTPKKIGPKYAPVGASNDPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIKFNGKLPHWSNDDPGKGNLYTAGQCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGYKVDKNPEPGALFIAEQGAGGHDGHYGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERTLKMTDGYSFIHDKE
⊟Experimental data[edit | edit source]
- experimentally validated:
- protein localization:
- quantitative data / protein copy number per cell:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: no data available
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.