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PangenomeCOLN315NCTC8325NewmanUSA300_FPR3757JSNZ04-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1480 [new locus tag: SAUSA300_RS08080 ]
  • pan locus tag?: SAUPAN004093000
  • symbol: SAUSA300_1480
  • pan gene symbol?: —
  • synonym:
  • product: putative traG membrane protein

⊟Additional information (user-provided)[edit | edit source]

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1480 [new locus tag: SAUSA300_RS08080 ]
  • symbol: SAUSA300_1480
  • product: putative traG membrane protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1633080..1634126
  • length: 1047
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    ATGGTAAATAAAAAAGATATTGCTAAAAAAGTAATAGGTAAAACGCCAATAGGCGTTAAA
    TTGAAATTAGCGAAAGTCATCATCATTTTATGTGTGGTGGCTTTTTTTATATTTCCAGTA
    ATTATAATGTTTTTGTTAGCGCCTGATTTAAATAAAGGTAAAGATGATGCTGGTTGTACT
    GTTAGTGGCGGTAATGTTTCGGCAAATGGTATTGATAAGTTTAACGAAAATGCTAAAGGT
    GGAAAATTAGAGGGTAAAGGAAAAGAAATACAGAAAATTGCAGAAAAAAATAAAGTACCT
    GTGAATATTTTTATGGCCATTATTGCGAGTGAATCACAATGGGGTAAAGGAGAAAATGCG
    ACAAGACAAAATAATCCTTTGTCTGTTATGGGTTCAAAATCGATTCATGATTCAACATAT
    CCAACTATTGAAGATGGTCTTAATGCGGGAGCTAAAAATTTGTATGATGTTTATATTTCT
    AAAGGTTTAGATACTCCTAAAAAAATAGGTCCCAAATATGCGCCTGTTGGTGCGTCAAAT
    GACCCTAATAATATGAATGCCCGTTGGATACCAACAGTTGAAAAAATTATGAAAGATTTA
    GGCGGTTCAGAAGCTAAAACGTCATGTAGTAATGGTAAAGGAAAGTCTATAAAGTTTAAT
    GGTAAATTGCCACATTGGTCAAATGATGACCCTGGAAAAGGTAATTTATACACTGCTGGT
    CAATGTACTTGGTATGCATACGGTATGCGTCAAAAAATGGGTAAACCTGTATCGACTTAT
    TGGCATGATGCACATAAATGGAATGATAGAGCTAAAGCTGAGGGTTATAAAGTTGATAAA
    AATCCGGAACCTGGTGCATTATTTATTGCTGAACAAGGTGCAGGCGGTCATGATGGGCAT
    TATGGTCATGTGGCTGTTGTTATTGGTGTAAGTGATGGTGGTAAAACATTTAGAATAACA
    GAAATGAATTGGGAAGGTGCTTTTAAAGTTAATGAACGTACATTGAAAATGACTGACGGA
    TATAGTTTTATTCATGATAAGGAGTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1047


⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1480 [new locus tag: SAUSA300_RS08080 ]
  • symbol: SAUSA300_1480
  • description: putative traG membrane protein
  • length: 348
  • theoretical pI: 9.84457
  • theoretical MW: 37824.1
  • GRAVY: -0.470402

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Secretory antigen SsaA-like protein transposon-related
  • PFAM:
    Peptidase_CA (CL0125) CHAP; CHAP domain (PF05257; HMM-score: 68.1)
    and 3 more
    Lysozyme (CL0037) Glucosaminidase; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (PF01832; HMM-score: 31.3)
    SLT_4; Transglycosylase SLT domain (PF19489; HMM-score: 13.2)
    SLT; Transglycosylase SLT domain (PF01464; HMM-score: 12.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Extracellular
    • Cytoplasmic Score: 0.01
    • Cytoplasmic Membrane Score: 0.09
    • Cellwall Score: 0.18
    • Extracellular Score: 9.72
    • Internal Helix: 1
  • DeepLocPro: Extracellular
    • Cytoplasmic Score: 0.0008
    • Cytoplasmic Membrane Score: 0.4731
    • Cell wall & surface Score: 0.0004
    • Extracellular Score: 0.5257
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -0.5
    • N-terminally Anchored Score: 7
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.016035
    • TAT(Tat/SPI): 0.000726
    • LIPO(Sec/SPII): 0.00374
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MVNKKDIAKKVIGKTPIGVKLKLAKVIIILCVVAFFIFPVIIMFLLAPDLNKGKDDAGCTVSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVNIFMAIIASESQWGKGENATRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYISKGLDTPKKIGPKYAPVGASNDPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIKFNGKLPHWSNDDPGKGNLYTAGQCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGYKVDKNPEPGALFIAEQGAGGHDGHYGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERTLKMTDGYSFIHDKE

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Additional information (user-provided)[edit | edit source]

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Additional information (user-provided)[edit | edit source]

⊟Other information (user-provided)[edit | edit source]

You can add further information about the gene and protein here. [edit]

⊟Literature[edit | edit source]

⊟References[edit | edit source]


⊟Relevant publications[edit | edit source]

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