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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159JSNZLGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1479 [new locus tag: SAUSA300_RS08075 ]
  • pan locus tag?: SAUPAN004092000
  • symbol: SAUSA300_1479
  • pan gene symbol?: —
  • synonym:
  • product: hypothetical protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1479 [new locus tag: SAUSA300_RS08075 ]
  • symbol: SAUSA300_1479
  • product: hypothetical protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1632483..1633073
  • length: 591
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    ATGAAGCAAAAAATTATTATGTTTACTCTTGTAACAGTAATATTATTTTGTGCTGTTTTA
    ATTGGTTATCAGATTCCTAAACAACAAGTTAAAATGAAACAAAATCAAATTGAAGATTTG
    CAGGAAGAACAACGTATATTAAGAGATAAAAATGGAGAGTTAAATAAATTAGTAAAGAGA
    CAATCAAAAACAGTTATTTCTGATGAAGAAAAACAAATACGTGAAGTTTCTTCAAATTTT
    GTTAAACAGATGTTTGAAATGAAAAAAGATTCTTCTTTTAAATCAAAAGCACCACAAATA
    AAGCCTTTAGTTACAAAGGATTATTACGATACATTATTTAAGGATTCTAAAGATAAATAT
    GATTTATATGATGATATAACGGTTAATGATATTCATGTTTATTTTGATACTTATGACCCT
    AAAAAAGATAGTTATAAAGTTTTTGTTCAGTTCGACGAACGTATTGAAACAGATGGAGAT
    GATAAAATTGAACATCGTCAAACATCTGCACAATTGGATTTAGTTCGTACAGCTGAAGGT
    TGGCGTATTGATAATTTAAAACGTTTCAATTTAAAACCTCTAGGACGTTAG
    60
    120
    180
    240
    300
    360
    420
    480
    540
    591

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1479 [new locus tag: SAUSA300_RS08075 ]
  • symbol: SAUSA300_1479
  • description: hypothetical protein
  • length: 196
  • theoretical pI: 9.15714
  • theoretical MW: 23315.6
  • GRAVY: -0.770918

⊟Function[edit | edit source]

  • TIGRFAM:
    Cellular processes Cellular processes Cell division cell division protein FtsL (TIGR02209; HMM-score: 5.8)
  • TheSEED  :
    • hypothetical protein transposon-related
  • PFAM:
    no clan defined DUF6675; Family of unknown function (DUF6675) (PF20380; HMM-score: 18.3)
    FtsL (CL0225) DivIC; Septum formation initiator (PF04977; HMM-score: 15.8)
    GT-B (CL0113) FUT8_N_cat; Alpha-(1,6)-fucosyltransferase N- and catalytic domains (PF19745; HMM-score: 14.8)
    and 6 more
    Peptidase_MA (CL0126) DUF3810; Protein of unknown function (DUF3810) (PF12725; HMM-score: 14)
    no clan defined Chordopox_G3; Chordopoxvirus G3 protein (PF06129; HMM-score: 13.9)
    TPR (CL0020) TAF6_C; TAF6 C-terminal HEAT repeat domain (PF07571; HMM-score: 12.1)
    no clan defined TMF_DNA_bd; TATA element modulatory factor 1 DNA binding (PF12329; HMM-score: 11.9)
    GPCR_A (CL0192) 7tm_1; 7 transmembrane receptor (rhodopsin family) (PF00001; HMM-score: 10.8)
    Oxa1 (CL0376) EMC3_TMCO1; Integral membrane protein EMC3/TMCO1-like (PF01956; HMM-score: 9.8)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic Membrane
    • Cytoplasmic Score: 0
    • Cytoplasmic Membrane Score: 4.6
    • Cellwall Score: 2.48
    • Extracellular Score: 2.92
    • Internal Helix: 1
  • DeepLocPro: Cytoplasmic Membrane
    • Cytoplasmic Score: 0.0001
    • Cytoplasmic Membrane Score: 0.9557
    • Cell wall & surface Score: 0.0028
    • Extracellular Score: 0.0414
  • LocateP: N-terminally anchored (No CS)
    • Prediction by SwissProt Classification: Membrane
    • Pathway Prediction: Sec-(SPI)
    • Intracellular possibility: 0.17
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 4
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: Signal peptide LIPO(Sec/SPII) length 22 aa
    • SP(Sec/SPI): 0.273713
    • TAT(Tat/SPI): 0.001051
    • LIPO(Sec/SPII): 0.406807
    • Cleavage Site: CS pos: 22-23. LIG-YQ. Pr: 0.2194
  • predicted transmembrane helices (TMHMM): 1

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MKQKIIMFTLVTVILFCAVLIGYQIPKQQVKMKQNQIEDLQEEQRILRDKNGELNKLVKRQSKTVISDEEKQIREVSSNFVKQMFEMKKDSSFKSKAPQIKPLVTKDYYDTLFKDSKDKYDLYDDITVNDIHVYFDTYDPKKDSYKVFVQFDERIETDGDDKIEHRQTSAQLDLVRTAEGWRIDNLKRFNLKPLGR

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL
  • protein localization: data available for COL
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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