PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004101000
• symbol^?: —
• synonym:
• description^?: replication initiation factor domain-containing protein

  descriptions from strain specific annotations:

  • replication initiation factor domain-containing protein
  • replication initiation factor family protein
  • replication initiation protein
  • RstA
• strand^?: -
• coordinates^?: 4380249..4381293
• synteny block^?: BlockID0031310
• occurrence^?: in 27% of 33 strains

⊟Orthologs

COL:
SACOL1583
N315:
—
NCTC8325:
—
Newman:
—
USA300_FPR3757:
SAUSA300_1487
04-02981:
—
08BA02176:
—
11819-97:
—
6850:
—
71193:
—
ECT-R 2:
—
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_12280
JH1:
—
JH9:
—
JKD6008:
SAA6008_02640
JKD6159:
—
LGA251:
—
M013:
—
MRSA252:
SAR1297
MSHR1132:
SAMSHR1132_15260
MSSA476:
—
Mu3:
—
Mu50:
—
MW2:
—
RF122:
—
ST398:
—
T0131:
SAT0131_02815
TCH60:
—
TW20:
SATW20_27220
USA300_TCH1516:
USA300HOU_0635
VC40:
—

⊟Genome Viewer

COL
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MTLKNQCTPLTNRGVERTNKSAVEAVVDWVQVTFHITPISAVIEDVIGLPITLFKKRNSG
  USA300_FPR3757  MTLKNQCTPLTNRGVERTNKSAVEAVVDWVQVTFHIAPISAVIEDVIGLPITLFKKRNSG
                  ************************************:***********************
  
  COL             IYFYNRGYEFSNIKLYYSSDDESMGIHLQLTGTGCREFEHHLQQLNKTWQDFFDKCLSVN
  USA300_FPR3757  IYFYNRGYEFSNIKLYYSSDDESMGIHLQLTGTGCREFEHHLQQLNKTWQDFFDKCLSVN
                  ************************************************************
  
  COL             ANFTRIDIAIDDYKTYLKVPLLIKKAEKAECVSRFRAGSAINGFNLSDGRSKGATFYIGS
  USA300_FPR3757  ANFTRIDIAIDDYKTYLKVPLLIKKAEKAECVSRFRAGSAINGFNLSDGRSKGATFYIGS
                  ************************************************************
  
  COL             KQSNLYCRFYEKNYEQAFKRHCDVEDIGLWNRYEIQMRKAYAVNCAKVLSRTDNISEIVK
  USA300_FPR3757  KQSNLYCRFYEKNYEQAFKRHCDVEDIGLWNRYEIQMRKAYAVNCAKVLSRTDNISEIVK
                  ************************************************************
  
  COL             SILHNNLRFISPPKDGNDKNRKRWPLYRPWALFIKDTEKLNLTTRPTLKSIEDNLDWLCK
  USA300_FPR3757  SILHNNLRFISPPKGGNDKNRKRWPLYRPWALFIKDTEKLNLTTRPTLKSIEDNLDWLCK
                  **************.*********************************************
  
  COL             QVATTLDTVLTAESMAQSEGLLTDTDFLDKILAHSQFNDEHTNRINHYLEALKQKKHLSK
  USA300_FPR3757  QVATTLDTVLTAESMAQSEGLLTDTDFLDKILAHSQFNDEHTNRINHYLEALKQKKHLSK
                  ************************************************************
  
  COL             DKC
  USA300_FPR3757  DKC
                  ***