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PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1487 [new locus tag: SAUSA300_RS08115 ]
  • pan locus tag?: SAUPAN004101000
  • symbol: SAUSA300_1487
  • pan gene symbol?: —
  • synonym:
  • product: replication initiation factor family protein

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1487 [new locus tag: SAUSA300_RS08115 ]
  • symbol: SAUSA300_1487
  • product: replication initiation factor family protein
  • replicon: chromosome
  • strand: -
  • coordinates: 1641686..1642777
  • length: 1092
  • essential: unknown

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    ATGACTTTAAAAAACCAGTGTACCCCCCTTACTAATAGGGGGGTAGAGCGTACAAATAAA
    AGTGCTGTGGAGGCAGTTGTTGACTGGGTTCAGGTCACTTTCCATATAGCCCCTATTTCA
    GCAGTAATTGAGGACGTTATCGGTTTGCCTATAACGTTGTTCAAAAAACGAAATAGTGGC
    ATTTACTTTTATAATCGCGGTTATGAATTTTCAAACATTAAATTGTATTATTCAAGTGAT
    GATGAATCAATGGGCATTCACTTACAGTTAACTGGTACAGGTTGTAGAGAGTTTGAACAT
    CATTTACAGCAGTTGAATAAAACTTGGCAAGATTTTTTTGACAAATGTTTATCAGTTAAT
    GCAAATTTTACAAGAATTGATATTGCAATTGATGATTATAAAACATATTTAAAAGTGCCT
    TTATTAATTAAAAAGGCTGAAAAAGCTGAGTGTGTTTCACGTTTTAGAGCTGGAAGCGCA
    ATAAACGGTTTTAATTTGTCAGACGGAAGAAGTAAAGGCGCTACTTTTTATATTGGTTCT
    AAACAAAGCAATTTATATTGTCGTTTTTATGAAAAGAATTATGAACAAGCGTTTAAACGT
    CATTGTGATGTCGAAGACATTGGGCTATGGAATCGTTATGAAATACAAATGCGAAAGGCA
    TATGCAGTTAATTGTGCGAAAGTGTTGAGTAGAACAGATAATATAAGCGAAATTGTAAAG
    TCTATATTGCATAATAATTTGCGTTTTATCTCTCCTCCTAAAGGTGGAAATGATAAAAAT
    CGTAAGCGGTGGCCATTATATAGACCTTGGGCGTTATTTATTAAAGATACTGAAAAATTG
    AATTTAACTACTAGACCAACATTAAAGTCCATTGAGGATAATCTTGATTGGTTATGTAAA
    CAAGTTGCTACTACTTTAGATACAGTGTTAACTGCCGAAAGTATGGCGCAATCTGAGGGG
    TTGCTTACAGATACTGATTTTTTAGATAAAATTTTAGCGCATTCACAATTTAATGATGAG
    CATACGAATAGAATTAATCATTATTTGGAGGCTTTAAAACAAAAAAAGCACTTATCAAAA
    GATAAGTGTTAA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    660
    720
    780
    840
    900
    960
    1020
    1080
    1092

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1487 [new locus tag: SAUSA300_RS08115 ]
  • symbol: SAUSA300_1487
  • description: replication initiation factor family protein
  • length: 363
  • theoretical pI: 8.98327
  • theoretical MW: 41952.6
  • GRAVY: -0.504959

⊟Function[edit | edit source]

  • TIGRFAM:
  • TheSEED  :
    • Transcriptional regulator, Cro/CI family protein transposon-related
  • PFAM:
    TBP-like (CL0407) Rep_trans; Replication initiation factor (PF02486; HMM-score: 174.7)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: Cytoplasmic
    • Cytoplasmic Score: 7.5
    • Cytoplasmic Membrane Score: 1.15
    • Cellwall Score: 0.62
    • Extracellular Score: 0.73
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.006994
    • TAT(Tat/SPI): 0.000386
    • LIPO(Sec/SPII): 0.000733
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MTLKNQCTPLTNRGVERTNKSAVEAVVDWVQVTFHIAPISAVIEDVIGLPITLFKKRNSGIYFYNRGYEFSNIKLYYSSDDESMGIHLQLTGTGCREFEHHLQQLNKTWQDFFDKCLSVNANFTRIDIAIDDYKTYLKVPLLIKKAEKAECVSRFRAGSAINGFNLSDGRSKGATFYIGSKQSNLYCRFYEKNYEQAFKRHCDVEDIGLWNRYEIQMRKAYAVNCAKVLSRTDNISEIVKSILHNNLRFISPPKGGNDKNRKRWPLYRPWALFIKDTEKLNLTTRPTLKSIEDNLDWLCKQVATTLDTVLTAESMAQSEGLLTDTDFLDKILAHSQFNDEHTNRINHYLEALKQKKHLSKDKC

⊟Experimental data[edit | edit source]

  • experimentally validated:
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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