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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004147000
- symbol?: recO
- synonym:
- description?: DNA repair protein RecO
- DNA repair protein RecO
- RecO family DNA repair protein
- DNA recombination and repair protein RecO
- putative recombinational DNA repair protein (RecF pathway)
- putative recombination protein O
- recombination protein RecO
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4416749..4417495
- synteny block?: BlockID0031770
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1524 (recO)
08BA02176:
C248_1609
11819-97:
MS7_1583 (recO)
6850:
RSAU_001431 (recO)
71193:
ST398NM01_1631
ECT-R 2:
ECTR2_1416 (recO)
ED133:
SAOV_1566
ED98:
SAAV_1558
HO 5096 0412:
SAEMRSA15_14860
JH1:
SaurJH1_1658
JH9:
SaurJH9_1624
JKD6008:
SAA6008_01535 (recO)
JKD6159:
SAA6159_01501 (recO)
LGA251:
SARLGA251_14720
M013:
M013TW_1581
MRSA252:
SAR1643
MSHR1132:
SAMSHR1132_14060
MSSA476:
SAS1504
Mu3:
SAHV_1553
Mu50:
SAV1566
MW2:
MW1518
RF122:
SAB1438c
ST398:
SAPIG1631 (recO)
T0131:
SAT0131_01661
TCH60:
HMPREF0772_11574 (recO)
TW20:
SATW20_15620
USA300_TCH1516:
USA300HOU_1567 (recO)
VC40:
SAVC_07080
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
N315 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
NCTC8325 --MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
Newman MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
USA300_FPR3757 MLMRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIY
**********************************************************
COL NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE
N315 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYASLAAETIERSMDEGDIAPYNYQLLQFVLE
NCTC8325 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE
Newman NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE
USA300_FPR3757 NQWRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLE
*******************************:****************************
COL KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
N315 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
NCTC8325 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
Newman KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
USA300_FPR3757 KIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEAS
************************************************************
COL KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
N315 KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
NCTC8325 KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
Newman KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
USA300_FPR3757 KDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQK
************************************************************
COL LINQLKRLEQ
N315 LINQLKRLEQ
NCTC8325 LINQLKRLEQ
Newman LINQLKRLEQ
USA300_FPR3757 LINQLKRLEQ
**********