Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004150000
- symbol?: cdd
- synonym:
- description?: cytidine deaminase
- strand?: -
- coordinates?: 4418423..4418827
- synteny block?: BlockID0031800
- occurrence?: in 100% of 33 strains
cdd : cytidine deaminase [1]
Staphylococcus aureus is able to deaminate exogenous or excess cytidine/deoxycytidine to generate uridine/deoxyuridine using cytidine deaminase. This property can be used to distinguish Staphylococcus aureus from other staphylococci and is particularly useful in identifying "false negatives" due to clfA or coa deficient Staphylococcus aureus.
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1526 (cdd)
08BA02176:
C248_1611 (cdd)
11819-97:
MS7_1585 (cdd)
6850:
RSAU_001433 (cdd)
71193:
ST398NM01_1633
ECT-R 2:
ECTR2_1418 (cdd)
ED133:
SAOV_1568 (cdd)
ED98:
SAAV_1560 (cdd)
HO 5096 0412:
SAEMRSA15_14880 (cdd)
JH1:
SaurJH1_1660
JH9:
SaurJH9_1626
JKD6008:
SAA6008_01538 (cdd)
JKD6159:
SAA6159_01503 (cdd)
LGA251:
SARLGA251_14740 (cdd)
M013:
M013TW_1583
MRSA252:
SAR1645 (cdd)
MSHR1132:
SAMSHR1132_14080
MSSA476:
SAS1506
Mu3:
SAHV_1555 (cdd)
Mu50:
SAV1568 (cdd)
MW2:
MW1520 (cdd)
RF122:
SAB1440c (cdd)
ST398:
SAPIG1633 (cdd)
T0131:
SAT0131_01664 (tilS)
TCH60:
HMPREF0772_11572 (cdd)
TW20:
SATW20_15640 (cdd)
USA300_TCH1516:
USA300HOU_1569 (cdd)
VC40:
SAVC_07090
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
N315 MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
NCTC8325 MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
Newman MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
USA300_FPR3757 MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASL
************************************************************
COL VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
N315 VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
NCTC8325 VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
Newman VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
USA300_FPR3757 VSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTV
************************************************************
COL AELLPFGFSGKDLE
N315 AELLPFGFSGKDLE
NCTC8325 AELLPFGFSGKDLE
Newman AELLPFGFSGKDLE
USA300_FPR3757 AELLPFGFSGKDLE
**************
- ↑ A Krasuski, E Michnowska-Swincow, T Jarzembowski
Cytidine deamination assay to differentiate Staphylococcus aureus from other staphylococci.
Lett Appl Microbiol: 2007, 45(5);497-503
[PubMed:17868316] [WorldCat.org] [DOI] (P p)