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Summary[edit | edit source]

  • pan ID?: SAUPAN004207000
  • symbol?: udk
  • synonym:
  • description?: uridine kinase

      descriptions from strain specific annotations:

    • uridine kinase
    • uridine monophosphate kinase
    • uridine/cytidine kinase
    • Uridine kinase (C1)
  • strand?: -
  • coordinates?: 4459913..4460536
  • synteny block?: BlockID0032350
  • occurrence?: in 100% of 33 strains

Orthologs[edit | edit source]

    COL:
    SACOL1666 (udk)
    N315:
    SA1439 (udk)
    NCTC8325:
    Newman:
    NWMN_1512 (udk)
    USA300_FPR3757:
    04-02981:
    SA2981_1569
    08BA02176:
    C248_1653 (udk)
    11819-97:
    MS7_1627 (udk)
    6850:
    RSAU_001473 (udk)
    71193:
    ST398NM01_1675
    ECT-R 2:
    ECTR2_1460 (udk)
    ED133:
    SAOV_1609 (udk)
    ED98:
    SAAV_1603 (udk)
    HO 5096 0412:
    SAEMRSA15_15290 (udk)
    JH1:
    SaurJH1_1702
    JH9:
    SaurJH9_1668
    JKD6008:
    SAA6008_01581 (udk)
    JKD6159:
    SAA6159_01544 (udk)
    LGA251:
    SARLGA251_15140 (udk)
    M013:
    M013TW_1630
    MRSA252:
    SAR1690 (udk)
    MSHR1132:
    SAMSHR1132_14480
    MSSA476:
    SAS1547
    Mu3:
    SAHV_1598 (udk)
    Mu50:
    SAV1611 (udk)
    MW2:
    MW1561 (udk)
    RF122:
    SAB1482c (udk)
    ST398:
    SAPIG1675 (udk)
    T0131:
    SAT0131_01708
    TCH60:
    HMPREF0772_11530 (udk)
    TW20:
    SATW20_16060 (udk)
    USA300_TCH1516:
    USA300HOU_1611 (udk)
    VC40:
    SAVC_07305

Genome Viewer[edit | edit source]

COL
N315
NCTC8325
Newman
USA300_FPR3757

Alignments[edit | edit source]

  • alignment of orthologues:
    CLUSTAL format alignment by MAFFT L-INS-i (v7.307)


    COL             MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
    N315            MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
    NCTC8325        MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
    Newman          MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
    USA300_FPR3757  MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDH
                    ************************************************************

    COL             PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
    N315            PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
    NCTC8325        PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
    Newman          PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
    USA300_FPR3757  PFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVL
                    ************************************************************

    COL             RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
    N315            RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
    NCTC8325        RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
    Newman          RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
    USA300_FPR3757  RDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYAD
                    ************************************************************

    COL             IIIPEGGSNKVAIDIMTTKIQSLVSKQ
    N315            IIIPEGGSNKVAIDIMTTKIQSLVSKQ
    NCTC8325        IIIPEGGSNKVAIDIMTTKIQSLVSKQ
    Newman          IIIPEGGSNKVAIDIMTTKIQSLVSKQ
    USA300_FPR3757  IIIPEGGSNKVAIDIMTTKIQSLVSKQ
                    ***************************