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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004230000
- symbol?: rarA
- synonym:
- description?: recombination factor protein RarA
- recombination factor protein RarA
- recombinase RarA
- recombination factor RarA
- replication-associated recombination protein A
- AAA ATPase
- ATPase, AAA family
- ATPase family associated with various cellular activities (AAA) family protein
- ATPase related to helicase subunit of the Holliday junction resolvase
- DNA-directed DNA polymerase III subunit gamma and tau
- putative ATPase
- putative ATPase (AAA family)
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4476688..4477971
- synteny block?: BlockID0032580
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1585
08BA02176:
C248_1669
11819-97:
MS7_1643
6850:
RSAU_001489
71193:
ST398NM01_1691
ECT-R 2:
ECTR2_1476
ED133:
SAOV_1625
ED98:
SAAV_1620
HO 5096 0412:
SAEMRSA15_15450
JH1:
SaurJH1_1718
JH9:
SaurJH9_1685
JKD6008:
SAA6008_01597 (rarA)
JKD6159:
SAA6159_01560 (rarA)
LGA251:
SARLGA251_15300
M013:
M013TW_1648
MRSA252:
SAR1707
MSHR1132:
SAMSHR1132_14640
MSSA476:
SAS1563
Mu3:
SAHV_1614
Mu50:
SAV1627
MW2:
MW1577
RF122:
SAB1497
ST398:
SAPIG1691
T0131:
SAT0131_01725
TCH60:
HMPREF0772_11514
TW20:
SATW20_16220
USA300_TCH1516:
—
VC40:
SAVC_07385
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
N315 MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
NCTC8325 MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
Newman MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
USA300_FPR3757 MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAI
***************************:********************************
COL SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
N315 SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
NCTC8325 SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
Newman SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
USA300_FPR3757 SGSTQYKFRQLNAVTNTKKDMQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK
************************************************************
COL IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
N315 IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
NCTC8325 IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
Newman IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
USA300_FPR3757 IVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQALTRAIEDDENGLKTYQPKIDE
************************************************************
COL DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
N315 DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
NCTC8325 DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
Newman DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
USA300_FPR3757 DAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
************************************************************
COL HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
N315 HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
NCTC8325 HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
Newman HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
USA300_FPR3757 HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTL
************************************************************
COL AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
N315 AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
NCTC8325 AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
Newman AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
USA300_FPR3757 AAIESAERLGLPEARIPLSQAVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDG
************************************************************
COL HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
N315 HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
NCTC8325 HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
Newman HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
USA300_FPR3757 HYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYYEPKTTSKSEQQLKEIYNNLL
************************************************************
COL KQRP
N315 KQRP
NCTC8325 KQRP
Newman KQRP
USA300_FPR3757 KQRP
****