Jump to navigation
Jump to search
⊟Summary[edit | edit source]
- pan ID?: SAUPAN004231000
- symbol?: tcdA
- synonym:
- description?: tRNA threonylcarbamoyladenosine dehydratase
- tRNA threonylcarbamoyladenosine dehydratase
- molybdopterin/thiamine biosynthesis dinucleotide-utilizing enzyme, putative
- dinucleotide-utilizing enzyme
- hesA/moeB/thiF family protein
- HesA/MoeB/ThiF family protein related toEC-YgdL
- ThiF/MoeB/HesA family protein
- ThiF/MoeB family protein
- ThiF family protein
- UBA/THIF-type NAD/FAD binding protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4478176..4478949
- synteny block?: BlockID0032590
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1586
08BA02176:
C248_1670
11819-97:
MS7_1644
6850:
RSAU_001490
71193:
ST398NM01_1692
ECT-R 2:
ECTR2_1477
ED133:
SAOV_1626
ED98:
SAAV_1621
HO 5096 0412:
SAEMRSA15_15460
JH1:
SaurJH1_1719
JH9:
SaurJH9_1686
JKD6008:
SAA6008_01598
JKD6159:
SAA6159_01561
LGA251:
SARLGA251_15310
M013:
M013TW_1649
MRSA252:
SAR1708
MSHR1132:
SAMSHR1132_14650
MSSA476:
SAS1564
Mu3:
SAHV_1615
Mu50:
SAV1628
MW2:
MW1578
RF122:
SAB1498c
ST398:
SAPIG1692
T0131:
SAT0131_01726
TCH60:
HMPREF0772_11513
TW20:
SATW20_16230
USA300_TCH1516:
USA300HOU_1626
VC40:
SAVC_07390
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDIT
N315 MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDIT
NCTC8325 MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDIT
Newman MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDIT
USA300_FPR3757 MKHQFSRNELAIGQQGLDLLKQQTVVILGVGGVGSFAAEALARTNIGHIILIDKDDVDIT
************************************************************
COL NVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVD
N315 NVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVD
NCTC8325 NVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVD
Newman NVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVD
USA300_FPR3757 NVNRQLHALTTTVGQSKVSLMEERIKLINPDCKVTPLHMFYTEETYEEIFDNYDIDYFVD
************************************************************
COL ASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKK
N315 ASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKK
NCTC8325 ASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKK
Newman ASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKK
USA300_FPR3757 ASDTIMYKVHLMKECLDRGIKVISSMGAANKTDPTRFTISDISKTHTDPMAKIIRQKLKK
************************************************************
COL LGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVV
N315 LGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVV
NCTC8325 LGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVV
Newman LGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVV
USA300_FPR3757 LGIRKGIPVVFSDESPIVIREDVKDIVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVV
************************************************************
COL NDVLKDIPVRRIKDKGQ
N315 NDVLKDIPVRRIKDKGQ
NCTC8325 NDVLKDIPVRRIKDKGQ
Newman NDVLKDIPVRRIKDKGQ
USA300_FPR3757 NDVLKDIPVRRIKDKGQ
*****************