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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004262000
- symbol?: radC
- synonym:
- description?: DNA repair protein RadC
- DNA repair protein RadC
- DNA repair protein RadC, putative
- JAB domain-containing protein
- Putative DNA repair protein, RadC
- DNA repair protein RadC family protein
- DNA repair protein RadC-like protein
- DNA repair RadC family protein
- truncated DNA repair protein RadC
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4504407..4518755
- synteny block?: BlockID0032900
- occurrence?: in 91% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1619 (radC)
08BA02176:
C248_1702 (radC)
11819-97:
MS7_1668
6850:
RSAU_001520 (radC)
71193:
ST398NM01_1715
ECT-R 2:
ECTR2_1501
ED133:
SAOV_1649
ED98:
SAAV_1646 (radC)
HO 5096 0412:
SAEMRSA15_15710 (radC)
JH1:
SaurJH1_1752
JH9:
SaurJH9_1718
JKD6008:
SAA6008_01628
JKD6159:
SAA6159_01586 (radC)
LGA251:
SARLGA251_15540 (radC)
M013:
M013TW_1674
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1589 (radC)
Mu3:
SAHV_1647
Mu50:
SAV1660 (truncated-radC)
MW2:
MW1604 (radC)
RF122:
SAB1521c (radC)
ST398:
SAPIG1715
T0131:
SAT0131_01761
TCH60:
HMPREF0772_11489 (radC)
TW20:
—
USA300_TCH1516:
USA300HOU_1652 (radC)
VC40:
SAVC_07515
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
N315 MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
NCTC8325 ----------MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
Newman MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
USA300_FPR3757 ----------MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNEL
**************************************************
COL KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
N315 KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
NCTC8325 KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
Newman KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
USA300_FPR3757 KKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDL
************************************************************
COL TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
N315 TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
NCTC8325 TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
Newman TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
USA300_FPR3757 TQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDV
************************************************************
COL TPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
N315 -------LTIV-------------------------------------
NCTC8325 TPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
Newman TPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
USA300_FPR3757 TPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
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