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NCBI: 10-JUN-2013

⊟Summary[edit | edit source]

  • organism: Staphylococcus aureus USA300_FPR3757
  • locus tag: SAUSA300_1608 [new locus tag: SAUSA300_RS08760 ]
  • pan locus tag?: SAUPAN004262000
  • symbol: radC
  • pan gene symbol?: radC
  • synonym:
  • product: DNA repair protein RadC

⊟Genome View[edit | edit source]

⊟Gene[edit | edit source]

⊟General[edit | edit source]

  • type: CDS
  • locus tag: SAUSA300_1608 [new locus tag: SAUSA300_RS08760 ]
  • symbol: radC
  • product: DNA repair protein RadC
  • replicon: chromosome
  • strand: -
  • coordinates: 1759529..1760185
  • length: 657
  • essential: unknown other strains

⊟Accession numbers[edit | edit source]

⊟Phenotype[edit | edit source]

Share your knowledge and add information here. [edit]

⊟DNA sequence[edit | edit source]

  • 1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    ATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATACAGAATTATTA
    GCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTG
    CTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAA
    GTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCATTTGAGTTAGGGGAA
    AGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAGTGATGTTGCT
    GATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTA
    AATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCG
    ATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAATGCCAATGCAATCATC
    GCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATATCATAACAACA
    ATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATC
    GGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA
    60
    120
    180
    240
    300
    360
    420
    480
    540
    600
    657

⊟Protein[edit | edit source]

⊟General[edit | edit source]

  • locus tag: SAUSA300_1608 [new locus tag: SAUSA300_RS08760 ]
  • symbol: RadC
  • description: DNA repair protein RadC
  • length: 218
  • theoretical pI: 7.14681
  • theoretical MW: 24133.7
  • GRAVY: -0.0949541

⊟Function[edit | edit source]

  • TIGRFAM:
    Genetic information processing DNA metabolism DNA replication, recombination, and repair DNA repair protein RadC (TIGR00608; HMM-score: 234.3)
  • TheSEED  :
    • DNA repair protein RadC
    DNA Metabolism DNA repair DNA repair, bacterial  DNA repair protein RadC
  • PFAM:
    JAB (CL0366) RadC; RadC-like JAB domain (PF04002; HMM-score: 153.8)
    and 2 more
    HHH (CL0198) HHH_2; Helix-hairpin-helix motif (PF12826; HMM-score: 16.3)
    JAB (CL0366) Prok-JAB; Prokaryotic homologs of the JAB domain (PF14464; HMM-score: 14.5)

⊟Structure, modifications & cofactors[edit | edit source]

  • domains:
  • modifications:
  • cofactors:
  • effectors:

⊟Localization[edit | edit source]

  • PSORTb: unknown (no significant prediction)
    • Cytoplasmic Score: 2.5
    • Cytoplasmic Membrane Score: 2.5
    • Cellwall Score: 2.5
    • Extracellular Score: 2.5
    • Internal Helices: 0
  • LocateP: Intracellular
    • Prediction by SwissProt Classification: Cytoplasmic
    • Pathway Prediction: No pathway
    • Intracellular possibility: 1
    • Signal peptide possibility: -1
    • N-terminally Anchored Score: 1
    • Predicted Cleavage Site: No CleavageSite
  • SignalP: no predicted signal peptide
    • SP(Sec/SPI): 0.012261
    • TAT(Tat/SPI): 0.005206
    • LIPO(Sec/SPII): 0.00208
  • predicted transmembrane helices (TMHMM): 0

⊟Accession numbers[edit | edit source]

⊟Protein sequence[edit | edit source]

  • MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

⊟Experimental data[edit | edit source]

  • experimentally validated: data available for COL, NCTC8325
  • protein localization:
  • quantitative data / protein copy number per cell:
  • interaction partners:

⊟Expression & Regulation[edit | edit source]

⊟Operon[edit | edit source]

⊟Regulation[edit | edit source]

  • regulator:

⊟Transcription pattern[edit | edit source]

⊟Protein synthesis (provided by Aureolib)[edit | edit source]

⊟Protein stability[edit | edit source]

  • half-life: no data available

⊟Biological Material[edit | edit source]

⊟Mutants[edit | edit source]

⊟Expression vector[edit | edit source]

⊟lacZ fusion[edit | edit source]

⊟GFP fusion[edit | edit source]

⊟two-hybrid system[edit | edit source]

⊟FLAG-tag construct[edit | edit source]

⊟Antibody[edit | edit source]

⊟Other Information[edit | edit source]

You are kindly invited to share additional interesting facts.

⊟Literature[edit | edit source]

⊟References[edit | edit source]

⊟Relevant publications[edit | edit source]

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