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NCBI: 10-JUN-2013
⊟Summary[edit | edit source]
- organism: Staphylococcus aureus USA300_FPR3757
- locus tag: SAUSA300_1608 [new locus tag: SAUSA300_RS08760 ]
- pan locus tag?: SAUPAN004262000
- symbol: radC
- pan gene symbol?: radC
- synonym:
- product: DNA repair protein RadC
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS
- locus tag: SAUSA300_1608 [new locus tag: SAUSA300_RS08760 ]
- symbol: radC
- product: DNA repair protein RadC
- replicon: chromosome
- strand: -
- coordinates: 1759529..1760185
- length: 657
- essential: unknown other strains
⊟Accession numbers[edit | edit source]
- Gene ID: 3915287 NCBI
- RefSeq: YP_494303 NCBI
- BioCyc: see SAUSA300_RS08760
- MicrobesOnline: 1293123 MicrobesOnline
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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601ATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATACAGAATTATTA
GCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTG
CTTAAATCTGCTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAA
GTTAAAGGGATTGGATTACAAAAAGCAATTACTTTAAAAGCAGCATTTGAGTTAGGGGAA
AGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAGTGATGTTGCT
GATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTA
AATTCAAAAAATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCG
ATTGTACATCCACGTGAAATTTTTAGTATTGCGGTGAGAGAAAATGCCAATGCAATCATC
GCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATATCATAACAACA
ATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATC
GGTGATAATAGATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SAUSA300_1608 [new locus tag: SAUSA300_RS08760 ]
- symbol: RadC
- description: DNA repair protein RadC
- length: 218
- theoretical pI: 7.14681
- theoretical MW: 24133.7
- GRAVY: -0.0949541
⊟Function[edit | edit source]
- TIGRFAM: DNA metabolism DNA replication, recombination, and repair DNA repair protein RadC (TIGR00608; HMM-score: 234.3)
- TheSEED :
- DNA repair protein RadC
- PFAM: JAB (CL0366) RadC; RadC-like JAB domain (PF04002; HMM-score: 153.8)and 2 moreHHH (CL0198) HHH_2; Helix-hairpin-helix motif (PF12826; HMM-score: 16.3)JAB (CL0366) Prok-JAB; Prokaryotic homologs of the JAB domain (PF14464; HMM-score: 14.5)
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb: unknown (no significant prediction)
- Cytoplasmic Score: 2.5
- Cytoplasmic Membrane Score: 2.5
- Cellwall Score: 2.5
- Extracellular Score: 2.5
- Internal Helices: 0
- LocateP: Intracellular
- Prediction by SwissProt Classification: Cytoplasmic
- Pathway Prediction: No pathway
- Intracellular possibility: 1
- Signal peptide possibility: -1
- N-terminally Anchored Score: 1
- Predicted Cleavage Site: No CleavageSite
- SignalP: no predicted signal peptide
- SP(Sec/SPI): 0.012261
- TAT(Tat/SPI): 0.005206
- LIPO(Sec/SPII): 0.00208
- predicted transmembrane helices (TMHMM): 0
⊟Accession numbers[edit | edit source]
⊟Protein sequence[edit | edit source]
- MPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAITLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSIAVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND
⊟Experimental data[edit | edit source]
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Transcription pattern[edit | edit source]
- S.aureus Expression Data Browser: data available for NCTC8325
⊟Protein synthesis (provided by Aureolib)[edit | edit source]
- Aureolib: no data available
⊟Protein stability[edit | edit source]
- half-life: no data available
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
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