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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004285000
- symbol?: hemC
- synonym:
- description?: porphobilinogen deaminase
- porphobilinogen deaminase
- hydroxymethylbilane synthase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4529185..4530111
- synteny block?: BlockID0033090
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1630 (hemC)
08BA02176:
C248_1711 (hemC)
11819-97:
MS7_1678 (hemC)
6850:
RSAU_001529 (hemC)
71193:
ST398NM01_1725
ECT-R 2:
ECTR2_1511 (hemC)
ED133:
SAOV_1659 (hemC)
ED98:
SAAV_1657 (hemC)
HO 5096 0412:
SAEMRSA15_15810 (hemC)
JH1:
SaurJH1_1762 (hemC)
JH9:
SaurJH9_1728 (hemC)
JKD6008:
SAA6008_01638 (hemC)
JKD6159:
SAA6159_01595 (hemC)
LGA251:
SARLGA251_15630 (hemC)
M013:
M013TW_1684
MRSA252:
SAR1750 (hemC)
MSHR1132:
SAMSHR1132_14980
MSSA476:
SAS1599 (hemC)
Mu3:
SAHV_1657 (hemC)
Mu50:
SAV1670 (hemC)
MW2:
MW1614 (hemC)
RF122:
SAB1530c (hemC)
ST398:
SAPIG1725 (hemC)
T0131:
SAT0131_01771
TCH60:
HMPREF0772_11480 (hemC)
TW20:
SATW20_16610 (hemC)
USA300_TCH1516:
USA300HOU_1662 (hemC)
VC40:
SAVC_07560 (hemC)
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
N315 MRKLVVGSRRSKLALTQSQQFINKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
NCTC8325 MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
Newman MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
USA300_FPR3757 MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
**********************:*************************************
COL VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
N315 VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
NCTC8325 VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
Newman VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
USA300_FPR3757 VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
************************************************************
COL SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
N315 SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
NCTC8325 SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
Newman SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
USA300_FPR3757 SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
************************************************************
COL IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
N315 IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
NCTC8325 IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
Newman IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
USA300_FPR3757 IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
************************************************************
COL CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
N315 CQVPIAGYATISDQKEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
NCTC8325 CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
Newman CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
USA300_FPR3757 CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
**************:*********************************************
COL IKRLNEQH
N315 IKRLNEQH
NCTC8325 IKRLNEQH
Newman IKRLNEQH
USA300_FPR3757 IKRLNEQH
********