PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004321000
• symbol^?: aapA
• synonym:
• description^?: alanine glycine permease

  descriptions from strain specific annotations:

  • alanine glycine permease
  • D-serine/D-alanine/glycine transporter
  • amino acid permease
  • D-serine/D-alanine/glycine permease
  • Amino acid permease-associated region
  • amino acid permease family protein
  • APC family amino acid-polyamine-organocation transporter
  • D-serine, D-alanine, glycine transporter
  • putative D-serine/D-alanine/glycine transporter
• strand^?: +
• coordinates^?: 4563267..4564628
• synteny block^?: BlockID0033450
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1743
N315:
SA1519 (aapA)
NCTC8325:
SAOUHSC_01803
Newman:
NWMN_1589 (aapA)
USA300_FPR3757:
SAUSA300_1642
04-02981:
SA2981_1655 (aapA)
08BA02176:
C248_1738 (cycA)
11819-97:
MS7_1703
6850:
RSAU_001554 (aapA)
71193:
ST398NM01_1750
ECT-R 2:
ECTR2_1536
ED133:
SAOV_1684 (cycA)
ED98:
SAAV_1686
HO 5096 0412:
SAEMRSA15_16060 (cycA)
JH1:
SaurJH1_1787
JH9:
SaurJH9_1753
JKD6008:
SAA6008_01663
JKD6159:
SAA6159_01620
LGA251:
SARLGA251_15880 (cycA)
M013:
M013TW_1709
MRSA252:
SAR1775 (cycA)
MSHR1132:
SAMSHR1132_15470
MSSA476:
SAS1624
Mu3:
SAHV_1682 (aapA)
Mu50:
SAV1696 (aapA)
MW2:
MW1640 (aapA)
RF122:
SAB1555 (cycA)
ST398:
SAPIG1750
T0131:
SAT0131_01798 (opp1B)
TCH60:
HMPREF0772_11455 (cycA2)
TW20:
SATW20_16860 (cycA)
USA300_TCH1516:
USA300HOU_1683
VC40:
SAVC_07685

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL
  N315            MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL
  NCTC8325        MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL
  Newman          MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL
  USA300_FPR3757  MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGL
                  ************************************************************
  
  COL             GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP
  N315            GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP
  NCTC8325        GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP
  Newman          GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP
  USA300_FPR3757  GEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIP
                  ************************************************************
  
  COL             NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA
  N315            NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA
  NCTC8325        NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA
  Newman          NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA
  USA300_FPR3757  NWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHA
                  ************************************************************
  
  COL             SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI
  N315            SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI
  NCTC8325        SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI
  Newman          SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI
  USA300_FPR3757  SFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRI
                  ************************************************************
  
  COL             LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF
  N315            LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF
  NCTC8325        LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF
  Newman          LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF
  USA300_FPR3757  LIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIF
                  ************************************************************
  
  COL             SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT
  N315            SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT
  NCTC8325        SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT
  Newman          SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT
  USA300_FPR3757  SNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVT
                  ************************************************************
  
  COL             TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN
  N315            TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN
  NCTC8325        TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN
  Newman          TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN
  USA300_FPR3757  TISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFIN
                  ************************************************************
  
  COL             VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
  N315            VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
  NCTC8325        VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
  Newman          VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
  USA300_FPR3757  VDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
                  *********************************