PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004457000
• symbol^?: ribB
• synonym:
• description^?: riboflavin synthase

  descriptions from strain specific annotations:

  • riboflavin synthase
  • riboflavin synthase subunit alpha
  • riboflavin synthase, alpha subunit
  • Riboflavin synthase alpha chain
• strand^?: -
• coordinates^?: 4704421..4705053
• synteny block^?: BlockID0034540
• occurrence^?: in 100% of 33 strains

⊟Orthologs

COL:
SACOL1819 (ribE)
N315:
SA1588 (ribB)
NCTC8325:
SAOUHSC_01888
Newman:
NWMN_1661 (ribB)
USA300_FPR3757:
SAUSA300_1714 (ribE)
04-02981:
SA2981_1725 (ribB)
08BA02176:
C248_1815 (ribE)
11819-97:
MS7_1773 (ribE)
6850:
RSAU_001624 (ribE)
71193:
ST398NM01_1821
ECT-R 2:
ECTR2_1607 (ribE)
ED133:
SAOV_1753 (ribE)
ED98:
SAAV_1779 (ribE)
HO 5096 0412:
SAEMRSA15_16760 (ribE)
JH1:
SaurJH1_1857
JH9:
SaurJH9_1822
JKD6008:
SAA6008_01742 (ribB)
JKD6159:
SAA6159_01690 (ribB)
LGA251:
SARLGA251_16570 (ribE)
M013:
M013TW_1783
MRSA252:
SAR1852 (ribE)
MSHR1132:
SAMSHR1132_16170
MSSA476:
SAS1693
Mu3:
SAHV_1755 (ribB)
Mu50:
SAV1770 (ribB)
MW2:
MW1710 (ribB)
RF122:
SAB1627c (ribE)
ST398:
SAPIG1821 (ribE)
T0131:
SAT0131_01884
TCH60:
HMPREF0772_11384 (ribE)
TW20:
SATW20_17600 (ribE)
USA300_TCH1516:
USA300HOU_1759 (ribB)
VC40:
SAVC_08055

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVNGACLTVIDFNQTSFTV
  N315            MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVNGACLTVIDFDQTSFTV
  NCTC8325        MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVNGACLTVIDFNQTSFTV
  Newman          MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVNGACLTVIDFNQTSFTV
  USA300_FPR3757  MFTGIVEEIGVVKSVQIRQSVRTIEIEAHKITADMHIGDSISVNGACLTVIDFNQTSFTV
                  *****************************************************:******
  
  COL             QVIKGTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHVDELGTVSKINETANAKII
  N315            QVIKSTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHVDELGTVSKINETANAKII
  NCTC8325        QVIKGTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHVDELGTVSKINETANAKII
  Newman          QVIKGTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHVDELGTVSKINETANAKII
  USA300_FPR3757  QVIKGTENKTYLADVKRQSEVNLERAMSGNGRFGGHFVLGHVDELGTVSKINETANAKII
                  ****.*******************************************************
  
  COL             TIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLIPETRRSTILSSKKLGDKVHL
  N315            TIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLIPETRRSTILSSKKLGDKVHL
  NCTC8325        TIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLIPETRRSTILSSKKLGDKVHL
  Newman          TIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLIPETRRSTILSSKKLGDKVHL
  USA300_FPR3757  TIQCSQHINNQLVKQGSITVDGVSLTVFDKHDNSFDIHLIPETRRSTILSSKKLGDKVHL
                  ************************************************************
  
  COL             ETDVLFKYVENILNKDKDQLSVDKLRAFGF
  N315            ETDVLFKYVENILNKDKDQLSVDKLRAFGF
  NCTC8325        ETDVLFKYVENILNKDKDQLSVDKLRAFGF
  Newman          ETDVLFKYVENILNKDKDQLSVDKLRAFGF
  USA300_FPR3757  ETDVLFKYVENILNKDKDQLSVDKLRAFGF
                  ******************************