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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004518000
- symbol?: —
- synonym:
- description?: lipoprotein, putative
- lipoprotein, putative
- lipoprotein
- pseudogene
- putative lipoprotein
descriptions from strain specific annotations:
- strand?: +
- coordinates?: 4744336..4744962
- synteny block?: BlockID0035090
- occurrence?: in 97% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1756
08BA02176:
C248_1845
11819-97:
MS7_1799
6850:
RSAU_001653
71193:
ST398NM01_1869
ECT-R 2:
ECTR2_1635
ED133:
SAOV_1781
ED98:
SAAV_1810
HO 5096 0412:
SAEMRSA15_17080
JH1:
SaurJH1_1887
JH9:
SaurJH9_1851
JKD6008:
SAA6008_01776
JKD6159:
SAA6159_01718
LGA251:
—
M013:
M013TW_1810
MRSA252:
SAR1881
MSHR1132:
SAMSHR1132_16450
MSSA476:
SAS1721
Mu3:
SAHV_1786
Mu50:
SAV1801
MW2:
MW1739
RF122:
SAB1655
ST398:
SAPIG1869
T0131:
SAT0131_01917 (gntK)
TCH60:
HMPREF0772_11356
TW20:
SATW20_17900
USA300_TCH1516:
USA300HOU_1788
VC40:
SAVC_08215
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MKFKAIVAITLSLSLLTACGANQHKENSSKSNDTNKKTQQTDNTTQSNTEKQMTPQEAED
N315 MKFKAIVAITLSFSLLTACGANQHKENNSKSNDTTKKTQETDNTTQSNTEKQMTPQEAED
NCTC8325 MKFKAIVAITLSLSLLTACGANQHKENSSKSNDTNKKTQQTDNTTQSNTEKQMTPQEAED
Newman MKFKAIVAITLSLSLLTACGANQHKENSSKSNDTNKKTQQTDNTTQSNTEKQMTPQEAED
USA300_FPR3757 ----------------------------------------------------MTPQEAED
********
COL IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
N315 IVRNDYKARGANENQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
NCTC8325 IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
Newman IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
USA300_FPR3757 IVRNDYKARGVNEYQTLNYKTNLERSNEHEYYVEHLVRDAVGTPLKRCAIVNRHNGTIIN
**********.** **********************************************
COL IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
N315 IFDDMSEKDKEEFEAFKKRSPKYNPGMSDHDKTDGESEDIQHHDNDNNKAIQNDTPDQKA
NCTC8325 IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
Newman IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
USA300_FPR3757 IFDDMSEKDKEEFEAFKKRSPKYNPGMNNHDETDGESEDIQHHDIDNNKAIQNDIPDQKV
***************************.:**:************ ********* ****.
COL DDKNDKNAVNKEEKHDNGANNSEETKVK
N315 VDKNDKNAVNKEEKHDNHAKNSAETKVK
NCTC8325 DDKNDKNAVNKEEKHDNGANNSEETKVK
Newman DDKNDKNAVNKEEKHDNGANNSEETKVK
USA300_FPR3757 DDKNDKNAVNKEEKHDNGANNSEETKVK
**************** *:** *****