PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004567000
• symbol^?: splA
• synonym:
• description^?: serine protease SplA

  descriptions from strain specific annotations:

  • serine protease SplA
  • serine protease
  • peptidase S1 and S6, chymotrypsin/Hap
  • peptidase S1 and S6 chymotrypsin/Hap
  • pseudogene
• strand^?: -
• coordinates^?: 4802338..4803054
• synteny block^?: BlockID0035550
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
SACOL1869 (splA)
N315:
SA1631 (splA)
NCTC8325:
SAOUHSC_01942
Newman:
NWMN_1706 (splA)
USA300_FPR3757:
SAUSA300_1758 (splA)
04-02981:
SA2981_1768 (splA)
08BA02176:
—
11819-97:
MS7_1814 (splA)
6850:
RSAU_001670 (splA)
71193:
—
ECT-R 2:
ECTR2_1645
ED133:
SAOV_1798c (splA)
ED98:
SAAV_1821 (splA)
HO 5096 0412:
—
JH1:
SaurJH1_1899
JH9:
SaurJH9_1864
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_16970 (splA)
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1736
Mu3:
SAHV_1798 (splA)
Mu50:
SAV1813 (splA)
MW2:
MW1755 (splA)
RF122:
SAB1673c
ST398:
—
T0131:
SAT0131_01933
TCH60:
—
TW20:
SATW20_18110 (splA)
USA300_TCH1516:
USA300HOU_1806 (splA)
VC40:
SAVC_08305

⊟Genome Viewer

COL
N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  COL             MNKNVMVKGLTALTILTILTSLGFAENISNQPHSIAKAEKNVKEITDATKEPYNSVVAFV
  N315            MNKNVMVKGLTA---LTILTSLGFAENISNQPHSIAKAEKNVKEITDATKAPYNSVVAFA
  NCTC8325        MNKNVMVKGLTA---LTILTSLGFAENISNQPHSIAKAEKNVKEITDATKEPYNSVVAFV
  Newman          MNKNVMVKGLTALTILTILTSLGFAENISNQPHSIAKAEKNVKEITDATKEPYNSVVAFV
  USA300_FPR3757  MNKNVMVKGLTA---LTILTSLGFAENISNQPHSIAKAEKNVKEITDATKEPYNSVVAFV
                  ************   *********************************** ********.
  
  COL             GGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIV
  N315            GGTGVVVGKNTIVTNKHIAKSNDIFKNRVAAHYSSKGKGGGNYDVKDIVEYPGKEDLAIV
  NCTC8325        GGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIV
  Newman          GGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIV
  USA300_FPR3757  GGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIV
                  *****************************:**:***************************
  
  COL             HVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGTF
  N315            HVHETSTEGLNFNKNVSYTKFAEGAKAKDRISVIGYPKGAQTKYKMFESTGTINHISGTF
  NCTC8325        HVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGTF
  Newman          HVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGTF
  USA300_FPR3757  HVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINHISGTF
                  **********************:***.*********************************
  
  COL             MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK
  N315            IEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK
  NCTC8325        MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK
  Newman          MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK
  USA300_FPR3757  MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFTPQLKEFIQNNIEK
                  :*********************************************************