PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN004577000
• symbol^?: epiC
• synonym:
• description^?: lanthionine synthetase

  descriptions from strain specific annotations:

  • lanthionine synthetase
  • epidermin biosynthesis protein EpiC
  • lantibiotic biosynthesis protein
  • lantibiotic epidermin biosynthesis protein EpiC
  • epidermin biosynthesis protein EpiC, authentic point mutation
  • lanthionine synthetase C-like family protein
  • pseudogene
• strand^?: -
• coordinates^?: 4809143..4819619
• synteny block^?: BlockID0035600
• occurrence^?: in 42% of 33 strains

⊟Orthologs

COL:
SACOL1876 (epiC)
N315:
—
NCTC8325:
SAOUHSC_01951
Newman:
NWMN_1714 (bsaC)
USA300_FPR3757:
SAUSA300_1765 (epiC)
04-02981:
—
08BA02176:
—
11819-97:
MS7_1821
6850:
—
71193:
—
ECT-R 2:
—
ED133:
SAOV_1805
ED98:
—
HO 5096 0412:
—
JH1:
—
JH9:
—
JKD6008:
—
JKD6159:
—
LGA251:
SARLGA251_17040
M013:
—
MRSA252:
—
MSHR1132:
—
MSSA476:
SAS1744
Mu3:
—
Mu50:
—
MW2:
MW1763 (bsaC)
RF122:
SAB1681c
ST398:
—
T0131:
SAT0131_01942
TCH60:
—
TW20:
SATW20_18180
USA300_TCH1516:
USA300HOU_1813 (epiC)
VC40:
SAVC_08340

⊟Genome Viewer

COL
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  NCTC8325        MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTE
  Newman          MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTE
  USA300_FPR3757  MIDMNLILKKKFQEISEVDDFISKASTETDYFEPSTLSHGIPGIILFLDAYQKVFDINTE
                  ************************************************************
  
  NCTC8325        QIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIE
  Newman          QIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIE
  USA300_FPR3757  QIVHKYIMKLAPYLQSGQYNNSLFGGLSGIAFSMDLASQNGKNYQNILNNIDGHIVNEIE
                  ************************************************************
  
  NCTC8325        NKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSW
  Newman          NKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSW
  USA300_FPR3757  NKFDQILQEPLNPLNYDTVSGLAGIGRYLLNRVDENEFNVKALKSILVYFKDIQYSKNSW
                  ************************************************************
  
  NCTC8325        VVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFI
  Newman          VVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFI
  USA300_FPR3757  VVPQESQFLESDKNYFTEGNINLGLAHGVLGPMSLFALCVIKGITIENHQHILKDMYKFI
                  ************************************************************
  
  NCTC8325        MDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKK
  Newman          MDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKK
  USA300_FPR3757  MDEKFCNHERWLQRYDLISERNHFNFIRNGWCYGNTGVMTTLFLIGQALQDDEIIKMSKK
                  ************************************************************
  
  NCTC8325        VMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDY
  Newman          VMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDY
  USA300_FPR3757  VMLQVVNDKDENLISPTICHGLSSQILMLTIMNLNFELNEVSDYITVLINKLISHYKEDY
                  ************************************************************
  
  NCTC8325        LVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS
  Newman          LVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS
  USA300_FPR3757  LVNFIDINENKQDVFKSRKVGLLEGELGVYLTLMTLKNTKILNEKNWTNAFLIS
                  ******************************************************