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⊟Summary[edit | edit source]
- pan ID?: SAUPAN004772000
- symbol?: cbf1
- synonym:
- description?: 3'-5' exoribonuclease YhaM
- 3'-5' exoribonuclease YhaM
- 3'-5' exoribonuclease
- cmp-binding-factor 1
- CMP-binding factor
- Metal dependent phosphohydrolase
- OB-fold nucleic acid binding domain-containing protein
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 4980619..4981560
- synteny block?: BlockID0037040
- occurrence?: in 100% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1798 (cbf1)
08BA02176:
C248_1884
11819-97:
MS7_1847
6850:
RSAU_001701 (cbfA)
71193:
ST398NM01_1908
ECT-R 2:
ECTR2_1684
ED133:
SAOV_1838
ED98:
SAAV_1861 (cbf1)
HO 5096 0412:
SAEMRSA15_17470
JH1:
SaurJH1_1929
JH9:
SaurJH9_1895
JKD6008:
SAA6008_01799 (yhaM)
JKD6159:
SAA6159_01770 (yhaM)
LGA251:
SARLGA251_17250
M013:
M013TW_1848
MRSA252:
SAR1933
MSHR1132:
SAMSHR1132_16880
MSSA476:
SAS1763
Mu3:
SAHV_1827 (cbf1)
Mu50:
SAV1842 (cbf1)
MW2:
MW1783 (cbf1)
RF122:
SAB1775c
ST398:
SAPIG1908
T0131:
SAT0131_01962
TCH60:
HMPREF0772_11302 (cbf)
TW20:
SATW20_18360
USA300_TCH1516:
USA300HOU_1834
VC40:
SAVC_08450
⊟Genome Viewer[edit | edit source]
| COL | |
| N315 | |
| NCTC8325 | |
| Newman | |
| USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
COL MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
N315 MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
NCTC8325 MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
Newman MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
USA300_FPR3757 MRNIENLNPGDSVDHFFLVHKATQGVTAQGKDYMTLHLQDKSGEIEAKFWTATKNDMATI
************************************************************
COL KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
N315 KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
NCTC8325 KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
Newman KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
USA300_FPR3757 KPEEIVHVKGDIINYRGNKQMKVNQIRLATTEDQLKTEQFVDGAPLSPAEIQEEISHYLL
************************************************************
COL DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
N315 DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
NCTC8325 DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
Newman DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
USA300_FPR3757 DIENANLQRITRHLLKKYQERFYTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL
************************************************************
COL NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
N315 NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
NCTC8325 NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
Newman NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
USA300_FPR3757 NKSLLYSGIILHDIGKVRELSGPVATSYTVEGNLLGHISIASDEVVEAARELNIEGEEIM
************************************************************
COL LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
N315 LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
NCTC8325 LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
Newman LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
USA300_FPR3757 LLRHMILSHHGKLEYGSPKLPYLKEAEILCYIDNIDARMNMFEKAYKKTDKGQFTDKIFG
************************************************************
COL LENRRFYNPESLD
N315 LENRRFYNPESLD
NCTC8325 LENRRFYNPESLD
Newman LENRRFYNPESLD
USA300_FPR3757 LENRRFYNPESLD
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