PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005029000
• symbol^?: ami
• synonym:
• description^?: amidase

  descriptions from strain specific annotations:

  • amidase
  • CHAP domain-containing protein
  • autolysin
  • bacteriophage autolysin amidase, putative
  • lytic enzyme
  • phage amidase
  • CHAP domain protein
  • CHAP protein
  • N-acetylmuramoyl-L-alanine amidase
• strand^?: -
• coordinates^?: 5198406..5199161
• synteny block^?: BlockID0039100
• occurrence^?: in 70% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1759
NCTC8325:
SAOUHSC_02173
Newman:
NWMN_1881
USA300_FPR3757:
SAUSA300_1923
04-02981:
SA2981_1906
08BA02176:
—
11819-97:
MS7_1980
6850:
RSAU_000616
71193:
—
ECT-R 2:
ECTR2_1818
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18620
JH1:
SaurJH1_2038
JH9:
SaurJH9_2003
JKD6008:
SAA6008_01952 (ami)
JKD6159:
SAA6159_01876 (ami)
LGA251:
—
M013:
—
MRSA252:
SAR2040
MSHR1132:
SAMSHR1132_17880
MSSA476:
SAS1869
Mu3:
SAHV_1931
Mu50:
SAV1945
MW2:
MW1886
RF122:
—
ST398:
—
T0131:
SAT0131_02079
TCH60:
HMPREF0772_11194 (amiD4)
TW20:
SATW20_19390
USA300_TCH1516:
USA300HOU_1951 (ami)
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
  NCTC8325        MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
  Newman          MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
  USA300_FPR3757  MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
                  ************************************************************
  
  N315            ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
  NCTC8325        ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
  Newman          ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
  USA300_FPR3757  ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
                  ************************************************************
  
  N315            RWDNYYGCTHFIRPKYKSEGLMNKITNKINPPAQKAVGKSASKITVGSKAPYNLKWSKGA
  NCTC8325        RWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKSASKITVGSKAPYNLKWSKGA
  Newman          RWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKSASKITVGSKAPYNLKWSKGA
  USA300_FPR3757  RWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKSASKITVGSKAPYNLKWSKGA
                  ****************************::******************************
  
  N315            YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
  NCTC8325        YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
  Newman          YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
  USA300_FPR3757  YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
                  ************************************************************
  
  N315            WHERLIVKEAF
  NCTC8325        WHERLIVKEVF
  Newman          WHERLIVKEVF
  USA300_FPR3757  WHERLIVKEVF
                  *********.*