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⊟Summary[edit | edit source]
- pan ID?: SAUPAN005029000
- symbol?: ami
- synonym:
- description?: amidase
- amidase
- CHAP domain-containing protein
- autolysin
- bacteriophage autolysin amidase, putative
- lytic enzyme
- phage amidase
- CHAP domain protein
- CHAP protein
- N-acetylmuramoyl-L-alanine amidase
descriptions from strain specific annotations:
- strand?: -
- coordinates?: 5198406..5199161
- synteny block?: BlockID0039100
- occurrence?: in 70% of 33 strains
⊟Orthologs[edit | edit source]
04-02981:
SA2981_1906
08BA02176:
—
11819-97:
MS7_1980
6850:
RSAU_000616
71193:
—
ECT-R 2:
ECTR2_1818
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18620
JH1:
SaurJH1_2038
JH9:
SaurJH9_2003
JKD6008:
SAA6008_01952 (ami)
JKD6159:
SAA6159_01876 (ami)
LGA251:
—
M013:
—
MRSA252:
SAR2040
MSHR1132:
SAMSHR1132_17880
MSSA476:
SAS1869
Mu3:
SAHV_1931
Mu50:
SAV1945
MW2:
MW1886
RF122:
—
ST398:
—
T0131:
SAT0131_02079
TCH60:
HMPREF0772_11194 (amiD4)
TW20:
SATW20_19390
USA300_TCH1516:
USA300HOU_1951 (ami)
VC40:
—
⊟Genome Viewer[edit | edit source]
N315 | |
NCTC8325 | |
Newman | |
USA300_FPR3757 |
⊟Alignments[edit | edit source]
- alignment of orthologues: CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
N315 MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
NCTC8325 MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
Newman MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
USA300_FPR3757 MKTYSEARARLRWYQGRYIDFDGWYGYQCADLAVDYIYWLLEIRMWGNAKDAINNDFKNM
************************************************************
N315 ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
NCTC8325 ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
Newman ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
USA300_FPR3757 ATVYENTPSFVPQIGDVAVFTKGIYKQYGHIGLVFNGGNTNQFLILEQNYDGNANTPAKL
************************************************************
N315 RWDNYYGCTHFIRPKYKSEGLMNKITNKINPPAQKAVGKSASKITVGSKAPYNLKWSKGA
NCTC8325 RWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKSASKITVGSKAPYNLKWSKGA
Newman RWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKSASKITVGSKAPYNLKWSKGA
USA300_FPR3757 RWDNYYGCTHFIRPKYKSEGLMNKITNKVKPPAQKAVGKSASKITVGSKAPYNLKWSKGA
****************************::******************************
N315 YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
NCTC8325 YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
Newman YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
USA300_FPR3757 YFNAKIDGLGATSATRYGDNRTNYRFDVGQAVYAPGTLIYVFEIIDGWCRIYWNNHNEWI
************************************************************
N315 WHERLIVKEAF
NCTC8325 WHERLIVKEVF
Newman WHERLIVKEVF
USA300_FPR3757 WHERLIVKEVF
*********.*