PangenomeCOLN315NCTC8325NewmanUSA300_FPR375704-0298108BA0217611819-97685071193ECT-R 2ED133ED98HO 5096 0412JH1JH9JKD6008JKD6159LGA251M013MRSA252MSHR1132MSSA476MW2Mu3Mu50RF122ST398T0131TCH60TW20USA300_TCH1516VC40

⊟Summary

• pan ID^?: SAUPAN005030000
• symbol^?: —
• synonym:
• description^?: holin

  descriptions from strain specific annotations:

  • holin
  • phage holin
  • bacteriophage holin
  • phage phi LC3 family holin
  • holin, phage phi LC3 family
  • holin-like protein
• strand^?: -
• coordinates^?: 5199173..5199427
• synteny block^?: BlockID0039110
• occurrence^?: in 67% of 33 strains

⊟Orthologs

COL:
—
N315:
SA1760
NCTC8325:
SAOUHSC_02174
Newman:
NWMN_1882
USA300_FPR3757:
SAUSA300_1924
04-02981:
SA2981_1907
08BA02176:
—
11819-97:
MS7_1981
6850:
RSAU_000615
71193:
—
ECT-R 2:
ECTR2_1819
ED133:
—
ED98:
—
HO 5096 0412:
SAEMRSA15_18630
JH1:
SaurJH1_2039
JH9:
SaurJH9_2004
JKD6008:
SAA6008_01951
JKD6159:
SAA6159_01877
LGA251:
—
M013:
—
MRSA252:
SAR2041
MSHR1132:
SAMSHR1132_17890
MSSA476:
SAS1870
Mu3:
SAHV_1932
Mu50:
SAV1946
MW2:
MW1887
RF122:
—
ST398:
—
T0131:
—
TCH60:
HMPREF0772_11193
TW20:
SATW20_19400
USA300_TCH1516:
USA300HOU_1952
VC40:
—

⊟Genome Viewer

N315
NCTC8325
Newman
USA300_FPR3757

⊟Alignments

• alignment of orthologues:
  CLUSTAL format alignment by MAFFT L-INS-i (v7.307)
  
  
  N315            MINWKIRMKQKSFWVAILSAIFLFAQNIAKAIGYDIQVYTEQLTDGLNAILGFLVLTGVI
  NCTC8325        MINWKIRMKQKSFWVAILSAIFLFAQNIAKAIGYDIQVYTEQLTDGLNAILGFLVLTGVI
  Newman          MINWKIRMKQKSFWVAILSAIFLFAQNIAKAIGYDIQVYTEQLTDGLNAILGFLVLTGVI
  USA300_FPR3757  MINWKIRMKQKSFWVAILSAIFLFAQNIAKAIGYDIQVYTEQLTDGLNAILGFLVLTGVI
                  ************************************************************
  
  N315            QDPTTKGIGDSHQALEYEEPRRKY
  NCTC8325        QDPTTKGIGDSHQALEYEEPRRKY
  Newman          QDPTTKGIGDSHQALEYEEPRRKY
  USA300_FPR3757  QDPTTKGIGDSHQALEYEEPRRKY
                  ************************